如何使用自定义SVM内核? [英] How to use a custom SVM kernel?

问题描述

我想用Python实现自己的高斯内核，只是为了锻炼.我正在使用: sklearn.svm.SVC(kernel=my_kernel)，但我真的不明白发生了什么事.

I'd like to implement my own Gaussian kernel in Python, just for exercise. I'm using: sklearn.svm.SVC(kernel=my_kernel) but I really don't understand what is going on.

我希望函数my_kernel以X矩阵的列作为参数来调用，而不是以X，X作为参数来调用它.查看示例并不清楚.

I expect the function my_kernel to be called with the columns of the X matrix as parameters, instead I got it called with X, X as arguments. Looking at the examples things are not clearer.

我想念什么?

这是我的代码:

'''
Created on 15 Nov 2014

@author: Luigi
'''
import scipy.io
import numpy as np
from sklearn import svm
import matplotlib.pyplot as plt

def svm_class(fileName):

    data = scipy.io.loadmat(fileName)
    X = data['X']
    y = data['y']

    f = svm.SVC(kernel = 'rbf', gamma=50, C=1.0)
    f.fit(X,y.flatten())
    plotData(np.hstack((X,y)), X, f)

    return

def plotData(arr, X, f):

    ax = plt.subplot(111)

    ax.scatter(arr[arr[:,2]==0][:,0], arr[arr[:,2]==0][:,1], c='r', marker='o', label='Zero')
    ax.scatter(arr[arr[:,2]==1][:,0], arr[arr[:,2]==1][:,1], c='g', marker='+', label='One')

    h = .02  # step size in the mesh
    # create a mesh to plot in
    x_min, x_max = X[:, 0].min() - 1, X[:, 0].max() + 1
    y_min, y_max = X[:, 1].min() - 1, X[:, 1].max() + 1
    xx, yy = np.meshgrid(np.arange(x_min, x_max, h),
                         np.arange(y_min, y_max, h))


    # Plot the decision boundary. For that, we will assign a color to each
    # point in the mesh [x_min, m_max]x[y_min, y_max].
    Z = f.predict(np.c_[xx.ravel(), yy.ravel()])

    # Put the result into a color plot
    Z = Z.reshape(xx.shape)
    plt.contour(xx, yy, Z)



    plt.xlim(np.min(arr[:,0]), np.max(arr[:,0]))
    plt.ylim(np.min(arr[:,1]), np.max(arr[:,1]))
    plt.show()
    return


def gaussian_kernel(x1,x2):
    sigma = 0.5
    return np.exp(-np.sum((x1-x2)**2)/(2*sigma**2))

if __name__ == '__main__':

    fileName = 'ex6data2.mat'
    svm_class(fileName)

推荐答案

在阅读完上述答案以及其他一些问题和网站后( 3 ， 4 ，

After reading the answer above, and some other questions and sites (1, 2, 3, 4, 5), I put this together for a gaussian kernel in svm.SVC().

用kernel=precomputed呼叫svm.SVC().

然后计算 Gram矩阵又称为内核矩阵(通常缩写为K).

Then compute a Gram Matrix a.k.a. Kernel Matrix (often abbreviated as K).

然后使用此Gram矩阵作为ie X) .html#sklearn.svm.SVC.fit"rel =" noreferrer> svm.SVC().fit() :

Then use this Gram Matrix as the first argument (i.e. X) to svm.SVC().fit():

我从以下代码:

C=0.1
model = svmTrain(X, y, C, "gaussian")

在sklearn.svm.SVC()的

. py"rel =" noreferrer> svmTrain() ，然后是sklearn.svm.SVC().fit():

from sklearn import svm

if kernelFunction == "gaussian":
    clf = svm.SVC(C = C, kernel="precomputed")
    return clf.fit(gaussianKernelGramMatrix(X,X), y)

革兰氏矩阵计算-用作sklearn.svm.SVC().fit()的参数-在

the Gram Matrix computation - used as a parameter to sklearn.svm.SVC().fit() - is done in gaussianKernelGramMatrix():

import numpy as np

def gaussianKernelGramMatrix(X1, X2, K_function=gaussianKernel):
    """(Pre)calculates Gram Matrix K"""

    gram_matrix = np.zeros((X1.shape[0], X2.shape[0]))
    for i, x1 in enumerate(X1):
        for j, x2 in enumerate(X2):
            gram_matrix[i, j] = K_function(x1, x2)
    return gram_matrix

使用 gaussianKernel() 以获得x1和x2之间的径向基函数内核(基于相似性的度量在以sigma = 0.1 为中心的x1上的高斯分布上:

which uses gaussianKernel() to get a radial basis function kernel between x1 and x2 (a measure of similarity based on a gaussian distribution centered on x1 with sigma=0.1):

def gaussianKernel(x1, x2, sigma=0.1):

    # Ensure that x1 and x2 are column vectors
    x1 = x1.flatten()
    x2 = x2.flatten()

    sim = np.exp(- np.sum( np.power((x1 - x2),2) ) / float( 2*(sigma**2) ) )

    return sim

然后，一旦使用此自定义内核训练了模型，我们将使用:

Then, once the model is trained with this custom kernel, we predict with "the [custom] kernel between the test data and the training data":

predictions = model.predict( gaussianKernelGramMatrix(Xval, X) )

简而言之，要使用自定义SVM高斯内核，可以使用以下代码段:

In short, to use a custom SVM gaussian kernel, you can use this snippet:

import numpy as np
from sklearn import svm

def gaussianKernelGramMatrixFull(X1, X2, sigma=0.1):
    """(Pre)calculates Gram Matrix K"""

    gram_matrix = np.zeros((X1.shape[0], X2.shape[0]))
    for i, x1 in enumerate(X1):
        for j, x2 in enumerate(X2):
            x1 = x1.flatten()
            x2 = x2.flatten()
            gram_matrix[i, j] = np.exp(- np.sum( np.power((x1 - x2),2) ) / float( 2*(sigma**2) ) )
    return gram_matrix

X=...
y=...
Xval=...

C=0.1
clf = svm.SVC(C = C, kernel="precomputed")
model = clf.fit( gaussianKernelGramMatrixFull(X,X), y )

p = model.predict( gaussianKernelGramMatrixFull(Xval, X) )

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