从EFO进行OWL解析 [英] OWL Parsing From EFO

问题描述

我一直在不停地尝试解析实验因子本体"(EFO)文件，但是我无法对其进行解析.我拥有的文件可以在Protege中很好地打开，但是我似乎无法将其加载到Java中.我看了几套示例代码，看似准确地复制了它们，但是我不明白为什么解析失败.这是我的代码:

I have been trying endlessly to parse the Experimental Factor Ontology (EFO) file, but I am not able to parse it. The file I have opens fine in Protege, but I cannot seem to get it to load in Java. I have looked at a few sets of example code, and I am copying them seemingly exactly, but I do not understand why parsing fails. Here is my code:

System.setProperty("entityExpansionLimit","100000000");
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
URI uri = URI.create("file:~/efo.owl");
IRI iri = IRI.create(uri);
OWLOntology ontology = manager.loadOntologyFromOntologyDocument(iri);

这是我得到的错误:

Could not load ontology: Problem parsing 
file:/~/efo.owl
Could not parse ontology.  Either a suitable parser could not be found, or 
parsing failed.  See parser logs below for explanation.
The following parsers were tried:

谢谢，我知道已经发布了一些类似的帖子，但是我一直无法弄清楚，而且非常绝望！如有必要，我可以提供堆栈跟踪，但是每个解析器都有一个跟踪.

Thank you, I know some similar posts have been made, but I have been unable to figure it out and am quite desperate! I can provide the stack trace if necessary, but it is quite long as there is a trace for each parser.

推荐答案

本地下载的文件一定有问题.直接从IRI本体加载本体.

There must be something wrong with the local, downloaded file. Loading the ontology directly from the ontology IRI worked.

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