R，biocLite，安装DESeq2时出错 [英] R, biocLite, error installing DESeq2

问题描述

几天来我一直在尝试安装DESeq2进行一些分析. R和biocLite是最新的，尝试运行

I've been trying to install DESeq2 to do some analysis for a couple days now. R and biocLite are up to date, and I'm running into permission errors when I try to run

biocLite("DESeq2")

我收到的大部分都是好消息，但最后我得到了:

I receive mostly good messages, but at the end I get:

1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘XML’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘annotate’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘genefilter’ had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘geneplotter’ had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘DESeq2’ had non-zero exit status
>

我试图编辑权限，通过sudo运行R，并将用户添加到人员组.

I've tried editing permissions, running R through sudo, and adding my user to the staff group.

我不知所措，该怎么做才能安装此软件?

I'm at a loss, what else can I do to get this installed?

谢谢

推荐答案

从日志来看，问题似乎源于XML包.如果libxml2库不可用，XML程序包将无法编译.要将其安装在Linux上:

From the log, it seems that the problem originated from XML package. XML package fails to compile if libxml2 library is not available. To install it on Linux:

sudo apt-get install libxml2 
sudo apt-get install libxml2-dev

然后重新运行安装.

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