在ggplot2中绘制基准图 [英] Plotting a bedgraph in ggplot2
问题描述
我以前一直使用Sushi包中的plotBedgraph函数来生成基准图，但是我目前正在尝试使用ggplot2重新创建它，因为它与我的实验室使用的其他绘图代码不兼容.
I had previously been using the plotBedgraph function from the Sushi package to generate bedgraph plots, however I am currently trying to recreate this using ggplot2 as it was not compatible with other plot code that my lab is using.
密度图似乎适合于该图，但是由于没有经验的R用户来自Python，我无法将正确的参数数据打包到图函数中.是否可以将下面的图像复制到ggplot中，也许作为密度图或其他合适的图函数?
A density plot seems suitable for the plot, but as an inexperienced R user coming from Python, I was unable to data-wrangle the correct arguments into the plot function. Would it be possible to replicate the below image in ggplot, perhaps as a density plot or another suitable plot function?
用于生成图的数据如下所示:
The data used to generate the plot is shown below:
chr13 0 41982 0.00000
chr13 41982 41994 0.10076
chr13 41994 42007 0.90151
chr13 42007 42009 1.73827
chr13 42009 42025 1.74104
chr13 42025 42040 2.55356
chr13 42040 42058 3.49472
chr13 42058 42072 4.29485
chr13 42072 42074 5.19204
chr13 42074 42076 4.29485
chr13 42076 42080 4.29924
chr13 42080 42085 4.30696
chr13 42085 42090 4.31473
chr13 42090 42093 4.32252
chr13 42093 42096 4.33021
chr13 42096 42099 4.33801
chr13 42099 42100 5.24009
chr13 42100 42107 4.33801
chr13 42107 42129 4.34580
chr13 42129 42145 3.54015
chr13 42145 42149 2.60059
chr13 42149 42164 2.57264
chr13 42164 42167 2.29211
chr13 42167 42190 2.57264
chr13 42190 42191 1.74104
chr13 42191 42193 2.57264
chr13 42193 42203 1.44231
chr13 42203 42212 1.74104
chr13 42212 42220 0.91309
chr13 42220 42221 0.96337
chr13 42221 42222 0.11592
chr13 42222 42225 0.16794
chr13 42225 42235 0.17174
chr13 42235 42242 0.17557
chr13 42242 42249 0.17939
chr13 42249 43000 0.00000
推荐答案
如何?
ggplot(data) + geom_rect(aes(xmin=start,xmax=end,ymin=0,ymax=value))
它只是将您的每个间隔绘制为一个填充的矩形，而无需进行纠缠.
It just draws each of your intervals as a filled rectangle, no wrangling required.
这篇关于在ggplot2中绘制基准图的文章就介绍到这了，希望我们推荐的答案对大家有所帮助，也希望大家多多支持IT屋！
