特殊的安装警告，导致包装发生故障 [英] peculiar installation warning causing packages to malfunction
本文介绍了特殊的安装警告，导致包装发生故障的处理方法，对大家解决问题具有一定的参考价值，需要的朋友们下面随着小编来一起学习吧！
问题描述
我要按照说明在R中安装xgboost软件包:
I want to install the package xgboost in R as per the instructions:
install.packages("drat", repos="https://cran.rstudio.com")
drat:::addRepo("dmlc")
install.packages("xgboost", repos="http://dmlc.ml/drat/", type = "source")
前两个软件包的安装似乎工作正常:
The installation of the first two packages seems to work fine:
install.packages("drat", repos="https://cran.rstudio.com")
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 49369 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- 0100 49369 100 49369 0 0 40981 0 0:00:01 0:00:01 --:--:-- 41004
The downloaded binary packages are in
/var/folders/sx/c5z57jp103s493xxcn9bhvwc0000gn/T//RtmpluolUL/downloaded_packages
drat:::addRepo("dmlc")
但是xgboost的最终安装确实是不规则的，我无法在上一篇文章中找到错误:
But the final installation of xgboost is really irregular and I couldn't fid the error in a previous post:
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 351k 100 351k 0 0 550k 0 --:--:-- --:--:-- --:--:-- 550k
* installing *source* package ‘xgboost’ ...
** libs
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c xgboost_R.cc -o xgboost_R.o
In file included from xgboost_R.cc:3:
./dmlc-core/include/dmlc/omp.h:13:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
1 warning generated.
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c xgboost_custom.cc -o xgboost_custom.o
In file included from xgboost_custom.cc:5:
In file included from ./include/xgboost/logging.h:13:
In file included from ./include/xgboost/./base.h:10:
./dmlc-core/include/dmlc/omp.h:13:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c xgboost_assert.c -o xgboost_assert.o
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c amalgamation/xgboost-all0.cc -o amalgamation/xgboost-all0.o
In file included from amalgamation/xgboost-all0.cc:13:
In file included from amalgamation/../src/metric/metric.cc:6:
In file included from ./include/xgboost/metric.h:14:
In file included from ./include/xgboost/./data.h:15:
In file included from ./include/xgboost/./base.h:10:
./dmlc-core/include/dmlc/omp.h:13:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
1 warning generated.
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c amalgamation/dmlc-minimum0.cc -o amalgamation/dmlc-minimum0.o
In file included from amalgamation/dmlc-minimum0.cc:8:
amalgamation/../dmlc-core/src/io/input_split_base.cc:26:22: warning: assigning field to itself [-Wself-assign-field]
this->align_bytes_ = align_bytes_;
^
In file included from amalgamation/dmlc-minimum0.cc:10:
In file included from amalgamation/../dmlc-core/src/data.cc:12:
In file included from amalgamation/../dmlc-core/src/data/disk_row_iter.h:19:
In file included from amalgamation/../dmlc-core/src/data/./libsvm_parser.h:13:
In file included from amalgamation/../dmlc-core/src/data/./text_parser.h:11:
./dmlc-core/include/dmlc/omp.h:13:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
2 warnings generated.
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rabit/src/engine_empty.cc -o rabit/src/engine_empty.o
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rabit/src/c_api.cc -o rabit/src/c_api.o
clang++ -std=c++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o xgboost.so ./xgboost_R.o ./xgboost_custom.o ./xgboost_assert.o ./amalgamation/xgboost-all0.o ./amalgamation/dmlc-minimum0.o ./rabit/src/engine_empty.o ./rabit/src/c_api.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/xgboost/libs
** R
** data
** demo
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (xgboost)
The downloaded source packages are in
‘/private/var/folders/sx/c5z57jp103s493xxcn9bhvwc0000gn/T/RtmpluolUL/downloaded_packages’
该软件包无法正确下载，因此，当我尝试在数据集上运行xgboost时，会出现以下错误:
The package does not download properly and hence it gives the following error when I try to run xgboost on a dataset:
Error in xgb.DMatrix(data, label = label, missing = missing) :
[14:53:26] amalgamation/../dmlc-core/src/io/local_filesys.cc:61: LocalFileSystem.GetPathInfo 201-225 Error:No such file or directory
推荐答案
根据这篇文章，当您看到此错误时，应仔细检查是否已向xgb.DMatrix函数提供了所有数字类型功能".为我解决了这个问题.
According to this post, you should "double check if you have provided all numeric type features to xgb.DMatrix function" when you see this error. Solved the issue for me.
这篇关于特殊的安装警告，导致包装发生故障的文章就介绍到这了，希望我们推荐的答案对大家有所帮助，也希望大家多多支持IT屋！
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