多处理:理解“chunksize"背后的逻辑 [英] multiprocessing: Understanding logic behind `chunksize`

查看：20
本文介绍了多处理:理解“chunksize"背后的逻辑的处理方法，对大家解决问题具有一定的参考价值，需要的朋友们下面随着小编来一起学习吧！

问题描述

哪些因素决定了 multiprocessing.Pool.map() 等方法的最佳 chunksize 参数?.map() 方法似乎对其默认块大小使用了任意启发式方法(解释如下)；是什么促使做出这种选择?是否有基于某些特定情况/设置的更周到的方法?

例如 - 说我是:

  • 将 iterable 传递给 .map()，其中包含约 1500 万个元素；
  • 在一台 24 核的机器上工作并使用默认的

    该图显示了对 pool.map() 的示例调用，沿着一行代码显示，取自 multiprocessing.pool.worker 函数，其中一个任务从 inqueue 读取被解包.worker 是池工作者进程的 MainThread 中的底层主函数.在 pool-method 中指定的 func-argument 将只匹配 worker-function 内的 func-variable 用于像 apply_async 和 imap 和 chunksize=1.对于带有 chunksize 参数的其余池方法，处理函数 func 将是一个映射器函数(mapstar 或 starmapstar).此函数将用户指定的 func 参数映射到可迭代对象 (--> "map-tasks") 的传输块的每个元素上.这花费的时间将任务也定义为一个工作单元.


    任务

    虽然整个处理一个块的任务"一词的使用与multiprocessing.pool中的代码匹配，但没有说明>单个调用到用户指定的func，一个块的元素作为参数，应该被引用.为避免命名冲突引起的混淆(想想 Pool 的 __init__-method 的 maxtasksperchild-parameter)，这个答案将参考任务中的单个工作单元作为 taskel.

    <块引用>

    taskel(来自task + element)是任务中的最小工作单元.它是由 Pool 方法的 func 参数指定的函数的单次执行，使用从 单个元素 获得的参数调用传输的块.任务由chunksize taskels组成.


    并行化开销 (PO)

    PO 由 Python 内部开销和进程间通信 (IPC) 开销组成.Python 中每个任务的开销伴随着打包和解包任务及其结果所需的代码.IPC 开销伴随着线程的必要同步和不同地址空间之间的数据复制(需要两个复制步骤:父 -> 队列 -> 子).IPC 开销的数量取决于操作系统、硬件和数据大小，因此很难对影响进行概括.

    <小时>

    2.并行化目标

    使用多处理时，我们的总体目标(显然)是最小化所有任务的总处理时间.为了实现这一总体目标，我们的技术目标需要优化硬件资源的利用率.

    实现技术目标的一些重要子目标是:

    • 最小化并行化开销(最著名，但并非唯一:

      记住chunksize cs_pool1 仍然缺少extra 调整以及cs_pool2 中包含的divmod 的余数.完整的算法.

      算法继续:

      如果额外:块大小 += 1

      现在，如果有余数(来自 divmod 操作的 extra)，那么将块大小增加 1 显然不能适用于每个任务.毕竟，如果是这样，就没有剩余的开始了.

      你如何在下图中看到，额外处理"的效果，现在rf_pool2的真实因素从下方4向4收敛，偏差稍微平滑一些.n_workers=4 和 len_iterable=500 的标准偏差从 rf_pool1 的 0.5233 下降到 0.4115rf_pool2 的代码>.

      最终，将 chunksize 增加 1 的效果是，传输的最后一个任务的大小仅为 len_iterable % chunksize 或 chunksize.

      额外处理的更有趣以及我们稍后将看到的更重要的效果，但是可以观察到生成块的数量(n_chunks).对于足够长的可迭代对象，Pool 完成的块大小算法(下图中的n_pool2)会将块的数量稳定在 n_chunks == n_workers * 4.相比之下，朴素算法(在初始 burp 之后)随着迭代长度的增长在 n_chunks == n_workers 和 n_chunks == n_workers + 1 之间不断交替.>

      下面你会发现两个增强的池信息函数和朴素的块大小算法.下一章将需要这些函数的输出.

      # mp_utils.py从集合导入namedtuple块信息 = 命名元组('Chunkinfo', ['n_workers', 'len_iterable', 'n_chunks','chunksize', 'last_chunk'])def calc_chunksize_info(n_workers, len_iterable, factor=4):"""计算块大小."""块大小，额外 = divmod(len_iterable，n_workers * 因子)如果额外:块大小 += 1# `+ (len_iterable % chunksize > 0)` 利用 `True == 1`n_chunks = len_iterable//chunksize + (len_iterable % chunksize > 0)# 利用`0 == False`last_chunk = len_iterable % 块大小或块大小返回块信息(n_workers、len_iterable、n_chunks、chunksize、last_chunk)

      不要被 calc_naive_chunksize_info 可能出乎意料的外观所迷惑.divmod 中的 extra 不用于计算块大小.

      def calc_naive_chunksize_info(n_workers, len_iterable):"""计算简单的块大小数字."""块大小，额外 = divmod(len_iterable，n_workers)如果块大小 == 0:块大小 = 1n_chunks = 额外last_chunk = 块大小别的:n_chunks = len_iterable//chunksize + (len_iterable % chunksize > 0)last_chunk = len_iterable % 块大小或块大小返回块信息(n_workers、len_iterable、n_chunks、chunksize、last_chunk)

      <小时>

      6.量化算法效率

      现在，在我们看到 Pool 的块大小算法的输出与朴素算法的输出相比看起来有何不同之后...

      • 如何判断 Pool 的方法是否确实改进某些东西?
      • 这东西到底是什么?

      如上一章所示，对于更长的可迭代对象(更多的 taskel)，Pool 的块大小算法大约将可迭代对象划分为 比可迭代对象多四倍的块幼稚的方法.更小的块意味着更多的任务，更多的任务意味着更多的并行化开销 (PO)，这种成本必须与增加调度灵活性的好处进行权衡(回想一下块大小的风险>1").

      出于相当明显的原因，Pool 的基本块大小算法无法为我们权衡调度灵活性与 PO.IPC 开销取决于操作系统、硬件和数据大小.该算法不知道我们在什么硬件上运行我们的代码，也不知道一个 taskel 需要多长时间才能完成.这是一种为所有可能的场景提供基本功能的启发式方法.这意味着它无法针对任何特定场景进行优化.如前所述，随着每个任务的计算时间增加(负相关)，PO 也越来越不受关注.

      当您回忆起第 2 章中的并行化目标时，一个要点是:

      • 所有 CPU 核心的高利用率

      前面提到的东西，Pool的块大小算法可以尝试改进的是空闲工作进程的最小化，分别是>CPU 核心的利用率.

      一个关于 multiprocessing.Pool 的关于 SO 的重复问题是由那些想知道在您期望所有工作进程都忙的情况下未使用的内核/空闲工作进程的人提出的.虽然这可能有很多原因，但在计算结束时空闲的工作进程是我们经常可以观察到的，即使在密集场景(每个任务的计算时间相等)的情况下，工作进程的数量不是块数的除数(n_chunks % n_workers > 0).

      现在的问题是:

      <块引用>

      我们如何才能切实地将我们对块大小的理解转化为能够解释观察到的工人利用率的东西，甚至可以比较不同算法在这方面的效率?

      <小时>

      6.1 模型

      为了在这里获得更深入的见解，我们需要一种并行计算的抽象形式，将过于复杂的现实简化到可管理的复杂程度，同时在定义的边界内保留重要性.这种抽象被称为模型.如果要收集数据，则此类并行化模型"(PM) 的实现会像实际计算一样生成工作人员映射的元数据(时间戳).模型生成的元数据允许在某些约束下预测并行计算的指标.

      此处定义的PM 中的两个子模型之一是分销模型 (DM).DM 解释了原子工作单元(taskel)如何分布在并行工作线程和时间上，除了各自的块大小算法、工作线程数量、输入可迭代(taskel 的数量)及其计算持续时间被考虑在内.这意味着不包括任何形式的开销.

      为了获得完整的PM，DM 扩展了一个开销模型 (OM)，代表了各种形式的并行化间接费用 (PO).这种模型需要为每个节点单独校准(硬件、操作系统相关性).OM 中表示多少形式的开销是开放的，因此可以存在具有不同复杂程度的多个OM.实施的OM 所需的准确度级别由特定计算的PO 的总体权重决定.更短的任务会导致 PO 的权重更高，如果我们试图预测并行化效率，这反过来需要更精确的OM(PE).

      <小时>

      6.2 并行调度 (PS)

      Parallel Schedule 是并行计算的二维表示，其中 x 轴表示时间，y 轴表示并行工作线程池.worker 的数量和总计算时间标志着一个矩形的扩展，其中绘制了较小的矩形.这些较小的矩形代表工作的原子单元(taskels).

      下面是一个PS 的可视化，它使用来自密集场景的池块大小算法的DM 的数据绘制.>

      • x 轴被分成相等的时间单位，其中每个单位代表任务所需的计算时间.
      • y 轴分为池使用的工作进程数.
      • 此处的 taskel 显示为最小的青色矩形，放入匿名工作进程的时间线(时间表)中.
      • 任务是工作时间线中的一个或多个任务单元，以相同的色调连续突出显示.
      • 空闲时间单位用红色图块表示.
      • 并行计划被划分为多个部分.最后一部分是尾部.

      组成部分的名称可以在下图中看到.

      在包含OM的完整PM中，空闲份额不仅限于尾部，还包括任务之间的空间，甚至任务之间.

      <小时>

      6.3 效率

      上面介绍的模型允许量化工人利用率.我们可以区分:

      • 分配效率 (DE) - 在 DM(或密集场景的简化方法)的帮助下计算.
      • 并行化效率 (PE) - 借助校准的 PM(预测)计算或根据实际计算的元数据计算.

      请务必注意，对于给定的并行化问题，计算效率不会自动与更快整体计算相关联.在这种情况下，工人利用率仅区分具有已开始但未完成的任务的工人和没有这种开放"任务的工人.这意味着，可能在 空闲时间跨度任务的时间跨度 未 注册.

      上述所有效率基本上都是通过计算除法繁忙共享/并行调度的商来获得的.DE 和 PE 之间的区别在于 Busy Share为开销延长的 PM 占用整个并行计划的较小部分.

      此答案将进一步仅讨论计算密集场景的 DE 的简单方法.这足以比较不同的块大小算法，因为...

      1. ... DM 是 PM 的一部分，它随着采用的不同块大小算法而变化.
      2. ...每个任务具有相同计算持续时间的密集场景描绘了一个稳定状态"，对于这种状态，这些时间跨度不存在等式.任何其他场景都只会导致随机结果，因为 taskel 的顺序很重要.

      <小时>

      6.3.1 绝对分配效率 (ADE)

      这个基本效率一般可以通过将忙碌份额除以并行时间表的全部潜力来计算:

      <块引用>

      绝对分配效率 (ADE) = 忙份额/并行调度

      对于密集场景，简化的计算代码如下所示:

      # mp_utils.pydef calc_ade(n_workers, len_iterable, n_chunks, chunksize, last_chunk):"""计算绝对分配效率 (ADE).`len_iterable` 未使用，但包含以保持一致的签名用`calc_rde`."""如果 n_workers == 1:返回 1潜力 = (((n_chunks//n_workers + (n_chunks % n_workers > 1)) * chunksize)+ (n_chunks % n_workers == 1) * last_chunk) * n_workersn_full_chunks = n_chunks - (chunksize > last_chunk)taskels_in_regular_chunks = n_full_chunks * chunksizereal = taskels_in_regular_chunks + (chunksize > last_chunk) * last_chunkade = 真实/潜在回礼

      如果没有空闲份额，忙份额将等于并行调度，因此我们得到ADE 为 100%.在我们的简化模型中，这是一个场景，所有可用进程在处理所有任务所需的整个时间内都将处于忙碌状态.换句话说，整个工作可以有效地 100% 并行化.

      但是为什么我在这里一直将PE称为绝对 PE?

      要理解这一点，我们必须考虑确保最大调度灵活性的块大小 (cs) 的可能情况(还有可能存在的 Highlander 数量.巧合?):

      <块引用>

      __________________________________~ 一~__________________________________

      If we, for example, have four worker-processes and 37 taskels, there will be idling workers even with chunksize=1, just because n_workers=4 is not a divisor of 37. The remainder of dividing 37/4 is 1. This single remaining taskel will have to be processed by a sole worker, while the remaining three are idling.

      Likewise, there will still be one idling worker with 39 taskels, how you can see pictured below.

      When you compare the upper Parallel Schedule for chunksize=1 with the below version for chunksize=3, you will notice that the upper Parallel Schedule is smaller, the timeline on the x-axis shorter. It should become obvious now, how bigger chunksizes unexpectedly also can lead to increased overall computation times, even for Dense Scenarios.

      <块引用>

      But why not just use the length of the x-axis for efficiency calculations?

      Because the overhead is not contained in this model. It will be different for both chunksizes, hence the x-axis is not really directly comparable. The overhead can still lead to a longer total computation time like shown in case 2 from the figure below.

      <小时>

      6.3.2 Relative Distribution Efficiency (RDE)

      The ADE value does not contain the information if a better distribution of taskels is possible with chunksize set to 1. Better here still means a smaller Idling Share.

      To get a DE value adjusted for the maximum possible DE, we have to divide the considered ADE through the ADE we get for chunksize=1.

      <块引用>

      Relative Distribution Efficiency (RDE) = ADE_cs_x/ADE_cs_1

      Here is how this looks in code:

      # mp_utils.pydef calc_rde(n_workers, len_iterable, n_chunks, chunksize, last_chunk):"""Calculate Relative Distribution Efficiency (RDE)."""ade_cs1 = calc_ade(n_workers, len_iterable, n_chunks=len_iterable,chunksize=1, last_chunk=1)ade = calc_ade(n_workers, len_iterable, n_chunks, chunksize, last_chunk)rde = ade/ade_cs1return rde

      RDE, how defined here, in essence is a tale about the tail of a Parallel Schedule. RDE is influenced by the maximum effective chunksize contained in the tail. (This tail can be of x-axis length chunksize or last_chunk.)This has the consequence, that RDE naturally converges to 100% (even) for all sorts of "tail-looks" like shown in the figure below.

      A low RDE ...

      • is a strong hint for optimization potential.
      • naturally gets less likely for longer iterables, because the relative tail-portion of the overall Parallel Schedule shrinks.
      <小时>

      Please find Part II of this answer here.

      What factors determine an optimal chunksize argument to methods like multiprocessing.Pool.map()? The .map() method seems to use an arbitrary heuristic for its default chunksize (explained below); what motivates that choice and is there a more thoughtful approach based on some particular situation/setup?

      Example - say that I am:

      • Passing an iterable to .map() that has ~15 million elements;
      • Working on a machine with 24 cores and using the default processes = os.cpu_count() within multiprocessing.Pool().

      My naive thinking is to give each of 24 workers an equally-sized chunk, i.e. 15_000_000 / 24 or 625,000. Large chunks should reduce turnover/overhead while fully utilizing all workers. But it seems that this is missing some potential downsides of giving large batches to each worker. Is this an incomplete picture, and what am I missing?

      Part of my question stems from the default logic for if chunksize=None: both .map() and .starmap() call .map_async(), which looks like this:

      def _map_async(self, func, iterable, mapper, chunksize=None, callback=None,
               error_callback=None):
    # ... (materialize `iterable` to list if it's an iterator)
    if chunksize is None:
        chunksize, extra = divmod(len(iterable), len(self._pool) * 4)  # ????
        if extra:
            chunksize += 1
    if len(iterable) == 0:
        chunksize = 0

      What's the logic behind divmod(len(iterable), len(self._pool) * 4)? This implies that the chunksize will be closer to 15_000_000 / (24 * 4) == 156_250. What's the intention in multiplying len(self._pool) by 4?

      This makes the resulting chunksize a factor of 4 smaller than my "naive logic" from above, which consists of just dividing the length of the iterable by number of workers in pool._pool.

      Lastly, there is also this snippet from the Python docs on .imap() that further drives my curiosity:

      The chunksize argument is the same as the one used by the map() method. For very long iterables using a large value for chunksize can make the job complete much faster than using the default value of 1.

      Related answer that is helpful but a bit too high-level: Python multiprocessing: why are large chunksizes slower?.

      解决方案

      Short Answer

      Pool's chunksize-algorithm is a heuristic. It provides a simple solution for all imaginable problem scenarios you are trying to stuff into Pool's methods. As a consequence, it cannot be optimized for any specific scenario.

      The algorithm arbitrarily divides the iterable in approximately four times more chunks than the naive approach. More chunks mean more overhead, but increased scheduling flexibility. How this answer will show, this leads to a higher worker-utilization on average, but without the guarantee of a shorter overall computation time for every case.

      "That's nice to know" you might think, "but how does knowing this help me with my concrete multiprocessing problems?" Well, it doesn't. The more honest short answer is, "there is no short answer", "multiprocessing is complex" and "it depends". An observed symptom can have different roots, even for similar scenarios.

      This answer tries to provide you with basic concepts helping you to get a clearer picture of Pool's scheduling black box. It also tries to give you some basic tools at hand for recognizing and avoiding potential cliffs as far they are related to chunksize.

      Table of Contents

      Part I

      1. Definitions
      2. Parallelization Goals
      3. Parallelization Scenarios
      4. Risks of Chunksize > 1
      5. Pool's Chunksize-Algorithm

      6. Quantifying Algorithm Efficiency

        6.1 Models

        6.2 Parallel Schedule

        6.3 Efficiencies

        6.3.1 Absolute Distribution Efficiency (ADE)

        6.3.2 Relative Distribution Efficiency (RDE)

      Part II

      1. Naive vs. Pool's Chunksize-Algorithm
      2. Reality Check
      3. Conclusion

      It is necessary to clarify some important terms first.

      1. Definitions


      Chunk

      A chunk here is a share of the iterable-argument specified in a pool-method call. How the chunksize gets calculated and what effects this can have, is the topic of this answer.


      Task

      A task's physical representation in a worker-process in terms of data can be seen in the figure below.

      The figure shows an example call to pool.map(), displayed along a line of code, taken from the multiprocessing.pool.worker function, where a task read from the inqueue gets unpacked. worker is the underlying main-function in the MainThread of a pool-worker-process. The func-argument specified in the pool-method will only match the func-variable inside the worker-function for single-call methods like apply_async and for imap with chunksize=1. For the rest of the pool-methods with a chunksize-parameter the processing-function func will be a mapper-function (mapstar or starmapstar). This function maps the user-specified func-parameter on every element of the transmitted chunk of the iterable (--> "map-tasks"). The time this takes, defines a task also as a unit of work.


      Taskel

      While the usage of the word "task" for the whole processing of one chunk is matched by code within multiprocessing.pool, there is no indication how a single call to the user-specified func, with one element of the chunk as argument(s), should be referred to. To avoid confusion emerging from naming conflicts (think of maxtasksperchild-parameter for Pool's __init__-method), this answer will refer to the single units of work within a task as taskel.

      A taskel (from task + element) is the smallest unit of work within a task. It is the single execution of the function specified with the func-parameter of a Pool-method, called with arguments obtained from a single element of the transmitted chunk. A task consists of chunksize taskels.


      Parallelization Overhead (PO)

      PO consists of Python-internal overhead and overhead for inter-process communication (IPC). The per-task overhead within Python comes with the code needed for packaging and unpacking the tasks and its results. IPC-overhead comes with the necessary synchronization of threads and the copying of data between different address spaces (two copy steps needed: parent -> queue -> child). The amount of IPC-overhead is OS-, hardware- and data-size dependent, what makes generalizations about the impact difficult.

      2. Parallelization Goals

      When using multiprocessing, our overall goal (obviously) is to minimize total processing time for all tasks. To reach this overall goal, our technical goal needs to be optimizing the utilization of hardware resources.

      Some important sub-goals for achieving the technical goal are:

      • minimize parallelization overhead (most famously, but not alone: IPC)
      • high utilization across all cpu-cores
      • keeping memory usage limited to prevent the OS from excessive paging (trashing)

      At first, the tasks need to be computationally heavy (intensive) enough, to earn back the PO we have to pay for parallelization. The relevance of PO decreases with increasing absolute computation time per taskel. Or, to put it the other way around, the bigger the absolute computation time per taskel for your problem, the less relevant gets the need for reducing PO. If your computation will take hours per taskel, the IPC overhead will be negligible in comparison. The primary concern here is to prevent idling worker processes after all tasks have been distributed. Keeping all cores loaded means, we are parallelizing as much as possible.

      3. Parallelization Scenarios

      What factors determine an optimal chunksize argument to methods like multiprocessing.Pool.map()

      The major factor in question is how much computation time may vary across our single taskels. To name it, the choice for an optimal chunksize is determined by the Coefficient of Variation (CV) for computation times per taskel.

      The two extreme scenarios on a scale, following from the extent of this variation are:

      1. All taskels need exactly the same computation time.
      2. A taskel could take seconds or days to finish.

      For better memorability, I will refer to these scenarios as:

      1. Dense Scenario
      2. Wide Scenario


      Dense Scenario

      In a Dense Scenario it would be desirable to distribute all taskels at once, to keep necessary IPC and context switching at a minimum. This means we want to create only as much chunks, as much worker processes there are. How already stated above, the weight of PO increases with shorter computation times per taskel.

      For maximal throughput, we also want all worker processes busy until all tasks are processed (no idling workers). For this goal, the distributed chunks should be of equal size or close to.


      Wide Scenario

      The prime example for a Wide Scenario would be an optimization problem, where results either converge quickly or computation can take hours, if not days. Usually it is not predictable what mixture of "light taskels" and "heavy taskels" a task will contain in such a case, hence it's not advisable to distribute too many taskels in a task-batch at once. Distributing less taskels at once than possible, means increasing scheduling flexibility. This is needed here to reach our sub-goal of high utilization of all cores.

      If Pool methods, by default, would be totally optimized for the Dense Scenario, they would increasingly create suboptimal timings for every problem located closer to the Wide Scenario.

      4. Risks of Chunksize > 1

      Consider this simplified pseudo-code example of a Wide Scenario-iterable, which we want to pass into a pool-method: 

      good_luck_iterable = [60, 60, 86400, 60, 86400, 60, 60, 84600]

      Instead of the actual values, we pretend to see the needed computation time in seconds, for simplicity only 1 minute or 1 day. We assume the pool has four worker processes (on four cores) and chunksize is set to 2. Because the order will be kept, the chunks send to the workers will be these:

      [(60, 60), (86400, 60), (86400, 60), (60, 84600)]

      Since we have enough workers and the computation time is high enough, we can say, that every worker process will get a chunk to work on in the first place. (This does not have to be the case for fast completing tasks). Further we can say, the whole processing will take about 86400+60 seconds, because that's the highest total computation time for a chunk in this artificial scenario and we distribute chunks only once.

      Now consider this iterable, which has only one element switching its position compared to the previous iterable:

      bad_luck_iterable = [60, 60, 86400, 86400, 60, 60, 60, 84600]

      ...and the corresponding chunks:

      [(60, 60), (86400, 86400), (60, 60), (60, 84600)]

      Just bad luck with the sorting of our iterable nearly doubled (86400+86400) our total processing time! The worker getting the vicious (86400, 86400)-chunk is blocking the second heavy taskel in its task from getting distributed to one of the idling workers already finished with their (60, 60)-chunks. We obviously would not risk such an unpleasant outcome if we set chunksize=1.

      This is the risk of bigger chunksizes. With higher chunksizes we trade scheduling flexibility for less overhead and in cases like above, that's a bad deal.

      How we will see in chapter 6. Quantifying Algorithm Efficiency, bigger chunksizes can also lead to suboptimal results for Dense Scenarios.

      5. Pool's Chunksize-Algorithm

      Below you will find a slightly modified version of the algorithm inside the source code. As you can see, I cut off the lower part and wrapped it into a function for calculating the chunksize argument externally. I also replaced 4 with a factor parameter and outsourced the len() calls.

      # mp_utils.py

def calc_chunksize(n_workers, len_iterable, factor=4):
    """Calculate chunksize argument for Pool-methods.

    Resembles source-code within `multiprocessing.pool.Pool._map_async`.
    """
    chunksize, extra = divmod(len_iterable, n_workers * factor)
    if extra:
        chunksize += 1
    return chunksize

      To ensure we are all on the same page, here's what divmod does:

      divmod(x, y) is a builtin function which returns (x//y, x%y). x // y is the floor division, returning the down rounded quotient from x / y, while x % y is the modulo operation returning the remainder from x / y. Hence e.g. divmod(10, 3) returns (3, 1).

      Now when you look at chunksize, extra = divmod(len_iterable, n_workers * 4), you will notice n_workers here is the divisor y in x / y and multiplication by 4, without further adjustment through if extra: chunksize +=1 later on, leads to an initial chunksize at least four times smaller (for len_iterable >= n_workers * 4) than it would be otherwise.

      For viewing the effect of multiplication by 4 on the intermediate chunksize result consider this function:

      def compare_chunksizes(len_iterable, n_workers=4):
    """Calculate naive chunksize, Pool's stage-1 chunksize and the chunksize
    for Pool's complete algorithm. Return chunksizes and the real factors by
    which naive chunksizes are bigger.
    """
    cs_naive = len_iterable // n_workers or 1  # naive approach
    cs_pool1 = len_iterable // (n_workers * 4) or 1  # incomplete pool algo.
    cs_pool2 = calc_chunksize(n_workers, len_iterable)

    real_factor_pool1 = cs_naive / cs_pool1
    real_factor_pool2 = cs_naive / cs_pool2

    return cs_naive, cs_pool1, cs_pool2, real_factor_pool1, real_factor_pool2

      The function above calculates the naive chunksize (cs_naive) and the first-step chunksize of Pool's chunksize-algorithm (cs_pool1), as well as the chunksize for the complete Pool-algorithm (cs_pool2). Further it calculates the real factors rf_pool1 = cs_naive / cs_pool1 and rf_pool2 = cs_naive / cs_pool2, which tell us how many times the naively calculated chunksizes are bigger than Pool's internal version(s).

      Below you see two figures created with output from this function. The left figure just shows the chunksizes for n_workers=4 up until an iterable length of 500. The right figure shows the values for rf_pool1. For iterable length 16, the real factor becomes >=4(for len_iterable >= n_workers * 4) and it's maximum value is 7 for iterable lengths 28-31. That's a massive deviation from the original factor 4 the algorithm converges to for longer iterables. 'Longer' here is relative and depends on the number of specified workers.

      Remember chunksize cs_pool1 still lacks the extra-adjustment with the remainder from divmod contained in cs_pool2 from the complete algorithm.

      The algorithm goes on with:

      if extra:
    chunksize += 1

      Now in cases were there is a remainder (an extra from the divmod-operation), increasing the chunksize by 1 obviously cannot work out for every task. After all, if it would, there would not be a remainder to begin with.

      How you can see in the figures below, the "extra-treatment" has the effect, that the real factor for rf_pool2 now converges towards 4 from below 4 and the deviation is somewhat smoother. Standard deviation for n_workers=4 and len_iterable=500 drops from 0.5233 for rf_pool1 to 0.4115 for rf_pool2.

      Eventually, increasing chunksize by 1 has the effect, that the last task transmitted only has a size of len_iterable % chunksize or chunksize.

      The more interesting and how we will see later, more consequential, effect of the extra-treatment however can be observed for the number of generated chunks (n_chunks). For long enough iterables, Pool's completed chunksize-algorithm (n_pool2 in the figure below) will stabilize the number of chunks at n_chunks == n_workers * 4. In contrast, the naive algorithm (after an initial burp) keeps alternating between n_chunks == n_workers and n_chunks == n_workers + 1 as the length of the iterable grows.

      Below you will find two enhanced info-functions for Pool's and the naive chunksize-algorithm. The output of these functions will be needed in the next chapter.

      # mp_utils.py

from collections import namedtuple


Chunkinfo = namedtuple(
    'Chunkinfo', ['n_workers', 'len_iterable', 'n_chunks',
                  'chunksize', 'last_chunk']
)

def calc_chunksize_info(n_workers, len_iterable, factor=4):
    """Calculate chunksize numbers."""
    chunksize, extra = divmod(len_iterable, n_workers * factor)
    if extra:
        chunksize += 1
    # `+ (len_iterable % chunksize > 0)` exploits that `True == 1`
    n_chunks = len_iterable // chunksize + (len_iterable % chunksize > 0)
    # exploit `0 == False`
    last_chunk = len_iterable % chunksize or chunksize

    return Chunkinfo(
        n_workers, len_iterable, n_chunks, chunksize, last_chunk
    )

      Don't be confused by the probably unexpected look of calc_naive_chunksize_info. The extra from divmod is not used for calculating the chunksize.

      def calc_naive_chunksize_info(n_workers, len_iterable):
    """Calculate naive chunksize numbers."""
    chunksize, extra = divmod(len_iterable, n_workers)
    if chunksize == 0:
        chunksize = 1
        n_chunks = extra
        last_chunk = chunksize
    else:
        n_chunks = len_iterable // chunksize + (len_iterable % chunksize > 0)
        last_chunk = len_iterable % chunksize or chunksize

    return Chunkinfo(
        n_workers, len_iterable, n_chunks, chunksize, last_chunk
    )

      6. Quantifying Algorithm Efficiency

      Now, after we have seen how the output of Pool's chunksize-algorithm looks different compared to output from the naive algorithm...

      • How to tell if Pool's approach actually improves something?
      • And what exactly could this something be?

      As shown in the previous chapter, for longer iterables (a bigger number of taskels), Pool's chunksize-algorithm approximately divides the iterable into four times more chunks than the naive method. Smaller chunks mean more tasks and more tasks mean more Parallelization Overhead (PO), a cost which must be weighed against the benefit of increased scheduling-flexibility (recall "Risks of Chunksize>1").

      For rather obvious reasons, Pool's basic chunksize-algorithm cannot weigh scheduling-flexibility against PO for us. IPC-overhead is OS-, hardware- and data-size dependent. The algorithm cannot know on what hardware we run our code, nor does it have a clue how long a taskel will take to finish. It's a heuristic providing basic functionality for all possible scenarios. This means it cannot be optimized for any scenario in particular. As mentioned before, PO also becomes increasingly less of a concern with increasing computation times per taskel (negative correlation).

      When you recall the Parallelization Goals from chapter 2, one bullet-point was:

      • high utilization across all cpu-cores

      The previously mentioned something, Pool's chunksize-algorithm can try to improve is the minimization of idling worker-processes, respectively the utilization of cpu-cores.

      A repeating question on SO regarding multiprocessing.Pool is asked by people wondering about unused cores / idling worker-processes in situations where you would expect all worker-processes busy. While this can have many reasons, idling worker-processes towards the end of a computation are an observation we can often make, even with Dense Scenarios (equal computation times per taskel) in cases where the number of workers is not a divisor of the number of chunks (n_chunks % n_workers > 0).

      The question now is:

      How can we practically translate our understanding of chunksizes into something which enables us to explain observed worker-utilization, or even compare the efficiency of different algorithms in that regard?

      6.1 Models

      For gaining deeper insights here, we need a form of abstraction of parallel computations which simplifies the overly complex reality down to a manageable degree of complexity, while preserving significance within defined boundaries. Such an abstraction is called a model. An implementation of such a "Parallelization Model" (PM) generates worker-mapped meta-data (timestamps) as real computations would, if the data were to be collected. The model-generated meta-data allows predicting metrics of parallel computations under certain constraints.

      One of two sub-models within the here defined PM is the Distribution Model (DM). The DM explains how atomic units of work (taskels) are distributed over parallel workers and time, when no other factors than the respective chunksize-algorithm, the number of workers, the input-iterable (number of taskels) and their computation duration is considered. This means any form of overhead is not included.

      For obtaining a complete PM, the DM is extended with an Overhead Model (OM), representing various forms of Parallelization Overhead (PO). Such a model needs to be calibrated for each node individually (hardware-, OS-dependencies). How many forms of overhead are represented in a OM is left open and so multiple OMs with varying degrees of complexity can exist. Which level of accuracy the implemented OM needs is determined by the overall weight of PO for the specific computation. Shorter taskels lead to a higher weight of PO, which in turn requires a more precise OM if we were attempting to predict Parallelization Efficiencies (PE).

      6.2 Parallel Schedule (PS)

      The Parallel Schedule is a two-dimensional representation of the parallel computation, where the x-axis represents time and the y-axis represents a pool of parallel workers. The number of workers and the total computation time mark the extend of a rectangle, in which smaller rectangles are drawn in. These smaller rectangles represent atomic units of work (taskels).

      Below you find the visualization of a PS drawn with data from the DM of Pool's chunksize-algorithm for the Dense Scenario.

      • The x-axis is sectioned into equal units of time, where each unit stands for the computation time a taskel requires.
      • The y-axis is divided into the number of worker-processes the pool uses.
      • A taskel here is displayed as the smallest cyan-colored rectangle, put into a timeline (a schedule) of an anonymized worker-process.
      • A task is one or multiple taskels in a worker-timeline continuously highlighted with the same hue.
      • Idling time units are represented through red colored tiles.
      • The Parallel Schedule is partitioned into sections. The last section is the tail-section.

      The names for the composed parts can be seen in the picture below.

      In a complete PM including an OM, the Idling Share is not limited to the tail, but also comprises space between tasks and even between taskels.

      6.3 Efficiencies

      The Models introduced above allow quantifying the rate of worker-utilization. We can distinguish:

      • Distribution Efficiency (DE) - calculated with help of a DM (or a simplified method for the Dense Scenario).
      • Parallelization Efficiency (PE) - either calculated with help of a calibrated PM (prediction) or calculated from meta-data of real computations.

      It's important to note, that calculated efficiencies do not automatically correlate with faster overall computation for a given parallelization problem. Worker-utilization in this context only distinguishes between a worker having a started, yet unfinished taskel and a worker not having such an "open" taskel. That means, possible idling during the time span of a taskel is not registered.

      All above mentioned efficiencies are basically obtained by calculating the quotient of the division Busy Share / Parallel Schedule. The difference between DE and PE comes with the Busy Share occupying a smaller portion of the overall Parallel Schedule for the overhead-extended PM.

      This answer will further only discuss a simple method to calculate DE for the Dense Scenario. This is sufficiently adequate to compare different chunksize-algorithms, since...

      1. ... the DM is the part of the PM, which changes with different chunksize-algorithms employed.
      2. ... the Dense Scenario with equal computation durations per taskel depicts a "stable state", for which these time spans drop out of the equation. Any other scenario would just lead to random results since the ordering of taskels would matter.

      6.3.1 Absolute Distribution Efficiency (ADE)

      This basic efficiency can be calculated in general by dividing the Busy Share through the whole potential of the Parallel Schedule:

      Absolute Distribution Efficiency (ADE) = Busy Share / Parallel Schedule

      For the Dense Scenario, the simplified calculation-code looks like this:

      # mp_utils.py

def calc_ade(n_workers, len_iterable, n_chunks, chunksize, last_chunk):
    """Calculate Absolute Distribution Efficiency (ADE).

    `len_iterable` is not used, but contained to keep a consistent signature
    with `calc_rde`.
    """
    if n_workers == 1:
        return 1

    potential = (
        ((n_chunks // n_workers + (n_chunks % n_workers > 1)) * chunksize)
        + (n_chunks % n_workers == 1) * last_chunk
    ) * n_workers

    n_full_chunks = n_chunks - (chunksize > last_chunk)
    taskels_in_regular_chunks = n_full_chunks * chunksize
    real = taskels_in_regular_chunks + (chunksize > last_chunk) * last_chunk
    ade = real / potential

    return ade

      If there is no Idling Share, Busy Share will be equal to Parallel Schedule, hence we get an ADE of 100%. In our simplified model, this is a scenario where all available processes will be busy through the whole time needed for processing all tasks. In other words, the whole job gets effectively parallelized to 100 percent.

      But why do I keep referring to PE as absolute PE here?

      To comprehend that, we have to consider a possible case for the chunksize (cs) which ensures maximal scheduling flexibility (also, the number of Highlanders there can be. Coincidence?):

      __________________________________~ ONE ~__________________________________

      If we, for example, have four worker-processes and 37 taskels, there will be idling workers even with chunksize=1, just because n_workers=4 is not a divisor of 37. The remainder of dividing 37 / 4 is 1. This single remaining taskel will have to be processed by a sole worker, while the remaining three are idling.

      Likewise, there will still be one idling worker with 39 taskels, how you can see pictured below.

      When you compare the upper Parallel Schedule for chunksize=1 with the below version for chunksize=3, you will notice that the upper Parallel Schedule is smaller, the timeline on the x-axis shorter. It should become obvious now, how bigger chunksizes unexpectedly also can lead to increased overall computation times, even for Dense Scenarios.

      But why not just use the length of the x-axis for efficiency calculations?

      Because the overhead is not contained in this model. It will be different for both chunksizes, hence the x-axis is not really directly comparable. The overhead can still lead to a longer total computation time like shown in case 2 from the figure below.

      6.3.2 Relative Distribution Efficiency (RDE)

      The ADE value does not contain the information if a better distribution of taskels is possible with chunksize set to 1. Better here still means a smaller Idling Share.

      To get a DE value adjusted for the maximum possible DE, we have to divide the considered ADE through the ADE we get for chunksize=1.

      Relative Distribution Efficiency (RDE) = ADE_cs_x / ADE_cs_1

      Here is how this looks in code:

      # mp_utils.py

def calc_rde(n_workers, len_iterable, n_chunks, chunksize, last_chunk):
    """Calculate Relative Distribution Efficiency (RDE)."""
    ade_cs1 = calc_ade(
        n_workers, len_iterable, n_chunks=len_iterable,
        chunksize=1, last_chunk=1
    )
    ade = calc_ade(n_workers, len_iterable, n_chunks, chunksize, last_chunk)
    rde = ade / ade_cs1

    return rde

      RDE, how defined here, in essence is a tale about the tail of a Parallel Schedule. RDE is influenced by the maximum effective chunksize contained in the tail. (This tail can be of x-axis length chunksize or last_chunk.) This has the consequence, that RDE naturally converges to 100% (even) for all sorts of "tail-looks" like shown in the figure below.

      A low RDE ...

      • is a strong hint for optimization potential.
      • naturally gets less likely for longer iterables, because the relative tail-portion of the overall Parallel Schedule shrinks.

      Please find Part II of this answer here.

      这篇关于多处理:理解“chunksize"背后的逻辑的文章就介绍到这了，希望我们推荐的答案对大家有所帮助，也希望大家多多支持IT屋！

查看全文
相关文章
Python最新文章
热门教程
热门工具
登录 关闭
扫码关注1秒登录
发送“验证码”获取 | 15天全站免登陆