如何在R的topicmodels包中使用LDA函数重现准确的结果 [英] How to reproduce exact results with LDA function in R's topicmodels package

问题描述

我无法从topicmodels的LDA函数创建可重复的结果.从他们的文档中举个例子:

I've been unable to create reproducible results from topicmodels' LDA function. To take an example from their documentation:

library(topicmodels)
set.seed(0)
lda1 <- LDA(AssociatedPress[1:20, ], control=list(seed=0), k=2)
set.seed(0)
lda2 <- LDA(AssociatedPress[1:20, ], control=list(seed=0), k=2)
identical(lda1, lda2)
# [1] FALSE

如何从两个单独的LDA调用中获得相同的结果?

How can I get identical results from two separate calls to LDA?

顺便说一句(如果软件包作者在这里)，我发现control=list(seed=0)片段是不幸的，也是不必要的.在幕后，有一行if (missing(seed)) seed <- as.integer(Sys.time()).这不会使过程更可靠地随机化，只会撤消指定的种子.我想念什么吗?

As an aside (in case the package authors are on here), I find the control=list(seed=0) snippet unfortunate and unnecessary. Behind the scenes, there's a line for if (missing(seed)) seed <- as.integer(Sys.time()). This doesn't make the process more reliably random, it only undoes a specified seed. Am I missing something?

更新:正如@hrbrmstr在下面发现的那样，将种子作为控件传递会产生实际上相同的对象，唯一的区别是临时本地文件位置.因此，这个问题更像是一个误解(尽管如果该函数遵守set.seed()的话，看起来仍然会更清楚).

UPDATE: As @hrbrmstr discovered below, passing a seed as a control results in effectively identical objects, with the only difference being a temp local file location. So this question is more of a misunderstanding (though still seems like it would be clearer if the function respected set.seed()).

推荐答案

不是真正的答案"，但是没有其他方法可以发布代码段了:-)

Not really an "answer" but there's no other way to post code snippets :-)

我做了以下尝试:

library(topicmodels)

data(AssociatedPress)

lda1 <- LDA(AssociatedPress[1:20, ], control=list(seed=0), k=2)
lda2 <- LDA(AssociatedPress[1:20, ], control=list(seed=0), k=2)

identical(lda1, lda2)
[1] FALSE

all.equal(lda1, lda2)
[1] "Attributes: < Component 5: Attributes: < Component 10: 1 string mismatch > >"

a1 <- posterior(lda1, AssociatedPress)
a2 <- posterior(lda2, AssociatedPress)

identical(a1, a2)
[1] TRUE

all.equal(a1, a2)
[1] TRUE

all.equal(lda1@alpha,lda2@alpha)
[1] TRUE
all.equal(lda1@call,lda2@call)
[1] TRUE
all.equal(lda1@Dim,lda2@Dim)
[1] TRUE
all.equal(lda1@control,lda2@control)
[1] "Attributes: < Component 10: 1 string mismatch >"
all.equal(lda1@k,lda2@k)
[1] TRUE
all.equal(lda1@terms,lda2@terms)
[1] TRUE
all.equal(lda1@documents,lda2@documents)
[1] TRUE
all.equal(lda1@beta,lda2@beta)
[1] TRUE
all.equal(lda1@gamma,lda2@gamma)
[1] TRUE
all.equal(lda1@wordassignments,lda2@wordassignments)
[1] TRUE
all.equal(lda1@loglikelihood,lda2@loglikelihood)
[1] TRUE
all.equal(lda1@iter,lda2@iter)
[1] TRUE
all.equal(lda1@logLiks,lda2@logLiks)
[1] TRUE
all.equal(lda1@n,lda2@n)
[1] TRUE

identical(lda1@alpha,lda2@alpha)
[1] TRUE
identical(lda1@call,lda2@call)
[1] TRUE
identical(lda1@Dim,lda2@Dim)
[1] TRUE
identical(lda1@control,lda2@control)
[1] FALSE
identical(lda1@k,lda2@k)
[1] TRUE
identical(lda1@terms,lda2@terms)
[1] TRUE
identical(lda1@documents,lda2@documents)
[1] TRUE
identical(lda1@beta,lda2@beta)
[1] TRUE
identical(lda1@gamma,lda2@gamma)
[1] TRUE
identical(lda1@wordassignments,lda2@wordassignments)
[1] TRUE
identical(lda1@loglikelihood,lda2@loglikelihood)
[1] TRUE
identical(lda1@iter,lda2@iter)
[1] TRUE
identical(lda1@logLiks,lda2@logLiks)
[1] TRUE
identical(lda1@n,lda2@n)
[1] TRUE

不相等" @control重要吗?

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