使用networkx(python)读取没有节点标签的GML文件 [英] reading a GML file with networkx (python) without labels for the nodes

问题描述

我有一个很长的GML文件(图形建模语言)，我正试图用Networkx在Python中读取它. 在GML文件中，节点没有标签，如下所示:

I have a long GML file (Graph Modelling Language) that i am trying to read with Networkx in Python. In the GML file, nodes don't have label, like this:

graph [
  node [
    id 1
  ]
  node [
    id 2
  ]
  edge [
    source 2
    target 1
    ]
  ]

读取文件时出现错误: G = nx.read_gml('simple_graph.gml')

I get an error when reading the file: G = nx.read_gml('simple_graph.gml')

---------------------------------------------------------------------------
NetworkXError                             Traceback (most recent call last)
<ipython-input-39-b1b319a08668> in <module>()
----> 1 G = nx.read_gml('simple_graph.gml')

<decorator-gen-319> in read_gml(path, label, destringizer)

/usr/lib/python2.7/dist-packages/networkx/utils/decorators.pyc in _open_file(func, *args, **kwargs)
    218         # Finally, we call the original function, making sure to close the fobj.
    219         try:
--> 220             result = func(*new_args, **kwargs)
    221         finally:
    222             if close_fobj:

/usr/lib/python2.7/dist-packages/networkx/readwrite/gml.pyc in read_gml(path, label, destringizer)
    208             yield line
    209 
--> 210     G = parse_gml_lines(filter_lines(path), label, destringizer)
    211     return G
    212 

/usr/lib/python2.7/dist-packages/networkx/readwrite/gml.pyc in parse_gml_lines(lines, label, destringizer)
    407             raise NetworkXError('node id %r is duplicated' % (id,))
    408         if label != 'id':
--> 409             label = pop_attr(node, 'node', 'label', i)
    410             if label in labels:
    411                 raise NetworkXError('node label %r is duplicated' % (label,))

/usr/lib/python2.7/dist-packages/networkx/readwrite/gml.pyc in pop_attr(dct, type, attr, i)
    397         except KeyError:
    398             raise NetworkXError(
--> 399                 "%s #%d has no '%s' attribute" % (type, i, attr))
    400 
    401     nodes = graph.get('node', [])

NetworkXError: node #0 has no 'label' attribute

我看到它抱怨是因为节点没有标签.从GML的文档中，我认为标签不是强制性的(也许我错了吗?).有没有办法读取没有标签的文件?还是我应该更改我的gml文件? 谢谢您的帮助！

I see that it complains because the nodes don't have labels. From the documentation of GML i thought that labels were not obligatory (maybe i'm wrong?). Would there be a way to read such a file without labels? Or should i change my gml file? Thank you for your help!

推荐答案

如果要在GML中使用id属性标记节点，则可以按以下方式为nx.read_gml参数指定label属性.

If you want to use id attribute in GML for labeling nodes, you can designate the label attribute for the nx.read_gml argument as follows.

G = nx.read_gml('simple_graph.gml', label='id')

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