在Mac OS X Lion上安装rgeos和rgdal时出现问题 [英] Problems installing rgeos and rgdal on Mac OS X Lion

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本文介绍了在Mac OS X Lion上安装rgeos和rgdal时出现问题的处理方法，对大家解决问题具有一定的参考价值，需要的朋友们下面随着小编来一起学习吧！

问题描述

我正在尝试安装rgeos软件包(和rgdal)软件包.我有一个运行os x 10.7.1的macbook pro，并且具有R的最新版本2.13.1.我正在按照此网站上的说明进行操作: http://lostingeospace. blogspot.com/2011/08/rgeos-on-macos-x.html

I'm trying to install the rgeos package (and the rgdal) package. I have a macbook pro running os x 10.7.1 and I have the latest version of R, 2.13.1. I am following the instructions from this site: http://lostingeospace.blogspot.com/2011/08/rgeos-on-macos-x.html

我已经从 http://www.kyngchaos.com/software安装了最新的GDAL完整框架1.8:框架，并已从CRAN下载了源文件rgeos_0.1-8.tar.gz.

I have installed the latest GDAL complete framework 1.8 from http://www.kyngchaos.com/software:frameworks and have downloaded the source file rgeos_0.1-8.tar.gz from CRAN.

在终端中，按照说明输入以下内容:

In terminal, I input the following, as per the instructions:

R64 CMD INSTALL /Users/Pascal/Downloads/rgeos_0.1-8.tar.gz --configure-args='--with-geos-config=/Library/Frameworks/GEOS.framework/unix/bin/geos-config'

更确切地说，这是整个输出:

To be thorough, here is the entire output:

    * installing to library ‘/Users/Pascal/Library/R/2.13/library’
* installing *source* package ‘rgeos’ ...
geos-config: /Library/Frameworks/GEOS.framework/unix/bin/geos-config
GEOS: 3.3.0
CPPFLAGS: -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include
LIBS: -L/Library/Frameworks/GEOS.framework/Versions/3/unix/lib -lgeos
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c gpc_geos.c -o gpc_geos.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c init.c -o init.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c local_stubs.c -o local_stubs.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos.c -o rgeos.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_R2geos.c -o rgeos_R2geos.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_bbox.c -o rgeos_bbox.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_buffer.c -o rgeos_buffer.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_coord.c -o rgeos_coord.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_geos2R.c -o rgeos_geos2R.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_misc.c -o rgeos_misc.o
rgeos_misc.c: In function ‘rgeos_area’:
rgeos_misc.c:5: warning: passing argument 4 of ‘rgeos_miscfunc’ from incompatible pointer type
rgeos_misc.c: In function ‘rgeos_length’:
rgeos_misc.c:9: warning: passing argument 4 of ‘rgeos_miscfunc’ from incompatible pointer type
rgeos_misc.c: In function ‘rgeos_distance’:
rgeos_misc.c:51: warning: passing argument 5 of ‘rgeos_distancefunc’ from incompatible pointer type
rgeos_misc.c: In function ‘rgeos_hausdorffdistance’:
rgeos_misc.c:55: warning: passing argument 5 of ‘rgeos_distancefunc’ from incompatible pointer type
rgeos_misc.c: In function ‘rgeos_hausdorffdistancedensify’:
rgeos_misc.c:137: warning: passing argument 6 of ‘rgeos_distancedensifyfunc’ from incompatible pointer type
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_poly2nb.c -o rgeos_poly2nb.o
rgeos_poly2nb.c: In function ‘cb’:
rgeos_poly2nb.c:11: warning: cast from pointer to integer of different size
rgeos_poly2nb.c: In function ‘rgeos_poly_findInBox’:
rgeos_poly2nb.c:53: warning: cast to pointer from integer of different size
rgeos_poly2nb.c:62: warning: passing argument 4 of ‘GEOSSTRtree_query_r’ from incompatible pointer type
rgeos_poly2nb.c: In function ‘rgeos_binary_STRtree_query’:
rgeos_poly2nb.c:127: warning: cast to pointer from integer of different size
rgeos_poly2nb.c:151: warning: passing argument 4 of ‘GEOSSTRtree_query_r’ from incompatible pointer type
rgeos_poly2nb.c: In function ‘rgeos_unary_STRtree_query’:
rgeos_poly2nb.c:213: warning: cast to pointer from integer of different size
rgeos_poly2nb.c:222: warning: passing argument 4 of ‘GEOSSTRtree_query_r’ from incompatible pointer type
rgeos_poly2nb.c:242: warning: cast to pointer from integer of different size
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_predicate_binary.c -o rgeos_predicate_binary.o
rgeos_predicate_binary.c: In function ‘rgeos_intersects’:
rgeos_predicate_binary.c:94: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_contains’:
rgeos_predicate_binary.c:97: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_disjoint’:
rgeos_predicate_binary.c:100: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_touches’:
rgeos_predicate_binary.c:103: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_crosses’:
rgeos_predicate_binary.c:106: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_within’:
rgeos_predicate_binary.c:109: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_overlaps’:
rgeos_predicate_binary.c:112: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_equals’:
rgeos_predicate_binary.c:115: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_relate’:
rgeos_predicate_binary.c:118: warning: passing argument 5 of ‘rgeos_binpredfunc’ from incompatible pointer type
rgeos_predicate_binary.c: In function ‘rgeos_binpredfunc’:
rgeos_predicate_binary.c:149: warning: comparison of distinct pointer types lacks a cast
rgeos_predicate_binary.c:169: warning: comparison of distinct pointer types lacks a cast
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_predicate_unary.c -o rgeos_predicate_unary.o
rgeos_predicate_unary.c: In function ‘rgeos_isvalid’:
rgeos_predicate_unary.c:4: warning: passing argument 4 of ‘rgeos_unarypredfunc’ from incompatible pointer type
rgeos_predicate_unary.c: In function ‘rgeos_issimple’:
rgeos_predicate_unary.c:8: warning: passing argument 4 of ‘rgeos_unarypredfunc’ from incompatible pointer type
rgeos_predicate_unary.c: In function ‘rgeos_isring’:
rgeos_predicate_unary.c:12: warning: passing argument 4 of ‘rgeos_unarypredfunc’ from incompatible pointer type
rgeos_predicate_unary.c: In function ‘rgeos_hasz’:
rgeos_predicate_unary.c:16: warning: passing argument 4 of ‘rgeos_unarypredfunc’ from incompatible pointer type
rgeos_predicate_unary.c: In function ‘rgeos_isempty’:
rgeos_predicate_unary.c:20: warning: passing argument 4 of ‘rgeos_unarypredfunc’ from incompatible pointer type
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_topology.c -o rgeos_topology.o
rgeos_topology.c: In function ‘rgeos_envelope’:
rgeos_topology.c:5: warning: passing argument 5 of ‘rgeos_topologyfunc’ from incompatible pointer type
rgeos_topology.c: In function ‘rgeos_convexhull’:
rgeos_topology.c:9: warning: passing argument 5 of ‘rgeos_topologyfunc’ from incompatible pointer type
rgeos_topology.c: In function ‘rgeos_boundary’:
rgeos_topology.c:13: warning: passing argument 5 of ‘rgeos_topologyfunc’ from incompatible pointer type
rgeos_topology.c: In function ‘rgeos_getcentroid’:
rgeos_topology.c:17: warning: passing argument 5 of ‘rgeos_topologyfunc’ from incompatible pointer type
rgeos_topology.c: In function ‘rgeos_pointonsurface’:
rgeos_topology.c:21: warning: passing argument 5 of ‘rgeos_topologyfunc’ from incompatible pointer type
rgeos_topology.c: In function ‘rgeos_linemerge’:
rgeos_topology.c:25: warning: passing argument 5 of ‘rgeos_topologyfunc’ from incompatible pointer type
rgeos_topology.c: In function ‘rgeos_unioncascaded’:
rgeos_topology.c:29: warning: passing argument 5 of ‘rgeos_topologyfunc’ from incompatible pointer type
rgeos_topology.c: In function ‘rgeos_unaryunion’:
rgeos_topology.c:36: warning: passing argument 5 of ‘rgeos_topologyfunc’ from incompatible pointer type
rgeos_topology.c: In function ‘rgeos_topologyfunc’:
rgeos_topology.c:66: warning: comparison of distinct pointer types lacks a cast
rgeos_topology.c: In function ‘rgeos_polygonize’:
rgeos_topology.c:142: warning: passing argument 2 of ‘GEOSPolygonizer_getCutEdges_r’ from incompatible pointer type
rgeos_topology.c:143: warning: passing argument 2 of ‘GEOSPolygonize_r’ from incompatible pointer type
    gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_topology_binary.c -o rgeos_topology_binary.o
rgeos_topology_binary.c: In function ‘rgeos_difference’:
rgeos_topology_binary.c:4: warning: passing argument 6 of ‘rgeos_binarytopologyfunc’ from incompatible pointer type
rgeos_topology_binary.c: In function ‘rgeos_symdifference’:
rgeos_topology_binary.c:7: warning: passing argument 6 of ‘rgeos_binarytopologyfunc’ from incompatible pointer type
rgeos_topology_binary.c: In function ‘rgeos_intersection’:
rgeos_topology_binary.c:10: warning: passing argument 6 of ‘rgeos_binarytopologyfunc’ from incompatible pointer type
rgeos_topology_binary.c: In function ‘rgeos_union’:
rgeos_topology_binary.c:13: warning: passing argument 6 of ‘rgeos_binarytopologyfunc’ from incompatible pointer type
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_validate.c -o rgeos_validate.o
 gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVEUNARYUNION -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include -I/usr/local/include -I"/Users/Pascal/Library/R/2.13/library/sp/include"   -fPIC  -g -O2 -c rgeos_wkt.c -o rgeos_wkt.o
    gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rgeos.so gpc_geos.o init.o local_stubs.o rgeos.o rgeos_R2geos.o rgeos_bbox.o rgeos_buffer.o rgeos_coord.o rgeos_geos2R.o rgeos_misc.o rgeos_poly2nb.o rgeos_predicate_binary.o rgeos_predicate_unary.o rgeos_topology.o rgeos_topology_binary.o rgeos_validate.o rgeos_wkt.o -L/Library/Frameworks/GEOS.framework/Versions/3/unix/lib -lgeos -lgeos_c -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
    ld: warning: ignoring file /usr/local/lib/libgeos.dylib, missing required architecture x86_64 in file
    ld: warning: ignoring file /usr/local/lib/libgeos_c.dylib, missing required architecture x86_64 in file
    installing to /Users/Pascal/Library/R/2.13/library/rgeos/libs/x86_64
    ** R
    ** inst
    ** preparing package for lazy loading
    ** help
    *** installing help indices
    ** building package indices ...
    ** testing if installed package can be loaded
    Error in dyn.load(file, DLLpath = DLLpath, ...) : 
      unable to load shared object '/Users/Pascal/Library/R/2.13/library/rgeos/libs/x86_64/rgeos.so':
      dlopen(/Users/Pascal/Library/R/2.13/library/rgeos/libs/x86_64/rgeos.so, 6): Symbol not found: _GEOSArea_r
      Referenced from: /Users/Pascal/Library/R/2.13/library/rgeos/libs/x86_64/rgeos.so
      Expected in: flat namespace
     in /Users/Pascal/Library/R/2.13/library/rgeos/libs/x86_64/rgeos.so
    Error: loading failed
    Execution halted
    ERROR: loading failed
    * removing ‘/Users/Pascal/Library/R/2.13/library/rgeos’
    * restoring previous ‘/Users/Pascal/Library/R/2.13/library/rgeos’

rgdal安装也会出现同样的问题.

The same exact problem arises with the rgdal installation.

我不是真正的程序员....有人知道我应该做什么吗?

I'm not really a programmer....Does anyone have any idea what I should do?

谢谢！

推荐答案

我已经设法通过首先以与您相同的方式安装GDAL框架，使两者在MacOSX Lion中都能正常工作.

I've managed to get both working in MacOSX Lion by first installing the GDAL frameworks the same as you.

我已经在终端中从源代码安装了rgdal

I've installed rgdal from source in the terminal with

sudo R64 CMD install rgdal_0.7-1.tar.gz --configure-args='--with-gdal-config=/Library/Frameworks/GDAL.framework/unix/bin/gdal-config --with-proj-include=/Library/Frameworks/PROJ.framework/unix/include --with-proj-lib=/Library/Frameworks/PROJ.framework/unix/lib'

与rgeos类似:

sudo R64 CMD INSTALL rgeos_0.1-8.tar.gz --configure-args='--with-geos-config=/Library/Frameworks/GEOS.framework/unix/bin/geos-config'

请注意，我所有的R软件包都安装在系统级别，因此说明中给出的--configure-args='照常工作.

As a note, all of my R packages are installed at the system level, so the --configure-args=' as given in the instructions work as is.

这篇关于在Mac OS X Lion上安装rgeos和rgdal时出现问题的文章就介绍到这了，希望我们推荐的答案对大家有所帮助，也希望大家多多支持IT屋！

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