Python:ValueError:混合迭代和读取方法会丢失数据 [英] Python: ValueError: Mixing iteration and read methods would lose data

问题描述

执行下面的脚本时，我得到:

ValueError:混合迭代和读取方法会丢失数据

我了解这是因为num位于first for循环内，而last_host是num的依赖项，但我不知道如何解决此问题.

#!/usr/bin/env python2
import datetime as dt
import glob as glob
import os as os
import shutil as shutil
import signal as signal
import subprocess as sp
import sys as sys

# Open PDB file and read coordinates
pdb_file = open('align_z.pdb', 'r')
new_pdb_file = open('vac.pdb', 'w')



#Get last host atom
for num, line in enumerate(pdb_file, 1):
    if "L01" in line:
       print num
       break 


last_host=int(num)
print(last_host-1)

for atom in range(0, last_host-1):
    data = pdb_file.readline()
    new_pdb_file.write(data) 

解决方案

一旦通过enumerate迭代pdf_file，就无法再次对其进行迭代，除非调用pdb_file.seek(0) seek(0)将流位置更改为开头

这是我的修改内容

num = 1
for line in pdb_file:
    num += 1
    if "L01" in line:
       print num
       break 

pdb_file.seek(0)  # go back to the beginning and then it can be iterated again

last_host=int(num)
print(last_host-1)

for atom in range(0, last_host-1):
    data = pdb_file.readline()
    new_pdb_file.write(data) 

When executing the script below I get:

ValueError: Mixing iteration and read methods would lose data

I understand that this is because num is inside the first for loop and last_host is dependend of num but I have no idea how to work around this.

#!/usr/bin/env python2
import datetime as dt
import glob as glob
import os as os
import shutil as shutil
import signal as signal
import subprocess as sp
import sys as sys

# Open PDB file and read coordinates
pdb_file = open('align_z.pdb', 'r')
new_pdb_file = open('vac.pdb', 'w')



#Get last host atom
for num, line in enumerate(pdb_file, 1):
    if "L01" in line:
       print num
       break 


last_host=int(num)
print(last_host-1)

for atom in range(0, last_host-1):
    data = pdb_file.readline()
    new_pdb_file.write(data) 

解决方案

Once you iterate pdf_file by enumerate you cannot iterate it again except invoking pdb_file.seek(0) seek(0) changes the stream position to the beginning

Here's my modification:

num = 1
for line in pdb_file:
    num += 1
    if "L01" in line:
       print num
       break 

pdb_file.seek(0)  # go back to the beginning and then it can be iterated again

last_host=int(num)
print(last_host-1)

for atom in range(0, last_host-1):
    data = pdb_file.readline()
    new_pdb_file.write(data) 

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