在Python中包装R函数 [英] Wrap R function in python

问题描述

我想包装包含在princurve包中的R函数. 使用ipython，我可以使用ipython cell R magic成功做到这一点:

I would like to wrap a R function contained in a package princurve. With ipython I do it successfully with an ipython cell R magic:

%%R -i X -o s,lambda
fit1<-principal.curve(X)
s <- fit1$s
l <- fit1$lambda

但是我想要一个可以从以下模块导入的函数:

but I want a function that I can import from a module like:

from mymodule import principal_curve
s, l = principal_curve(X)

我想我必须直接使用rpy，我不确定如何...

I guess I have to use rpy directly, I am not sure how...

推荐答案

我不使用R，而是在

I don't use R but using this example in the docs you can define a function and import it into a python module:

r_mod.py

from rpy2.robjects.packages import SignatureTranslatedAnonymousPackage

string = """
square <- function(x) {
    return(x^2)
}

cube <- function(x) {
    return(x^3)
}
"""

powerpack = SignatureTranslatedAnonymousPackage(string, "powerpack")

py_mod.py

from r_mod import powerpack

print powerpack.square(3)
[1] 9

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