如何绘制基准输出? [英] How can I plot benchmark output?

问题描述

我正在学习 rbenchmark 包以对算法进行基准测试，并查看R环境中的性能.但是，当我增加输入量时，基准结果会彼此不同.为了显示算法对于不同输入的性能，需要生成折线图或曲线.我希望有一条线或曲线显示使用不同数量的输入时的性能差异.我使用的算法工作O(n ^ 2).在结果图中， X 轴显示输入的观察次数， Y 轴分别显示运行时间.我可以通过使用 ggplo2 更优雅地完成此操作?任何人都可以给我一些想法来生成所需的情节吗?有什么想法吗?

I am learning rbenchmark package to benchmark algorithm and see the performance in R environment. However, when I increased the input, benchmark result are varied one to another. To show how the performance of algorithm for different input, producing line graph or curve is needed. I expect to have one line or curve that show the performance difference of using different number of input. The algorithm I used, works O(n^2) .In resulted plot, X axis show number of observation of input, Y axis shows the run time respectively.How can I make this happen more elegantly by using ggplo2 ? Can anyone give me some idea to generate desired plot ? Any idea please ?

让我们想象一下，这些是输入文件:

Let's imagine, these are input files :

foo.csv
bar.csv
cat.csv

当我使用两个csv文件作为输入时的基准测试结果:

benchmark result when I used two csv files as an input :

df_2 <- data.frame(
    test=c("s3","s7","s4" ,"s1" ,"s2" ,"s5" ,"s6" ,"s9","s8"),
    replications=c(10,10, 10, 10 ,10 ,10 ,10 ,10 ,10),
    elapsed=c(0.23,  0.28,  0.53 , 0.80 , 4.12 , 8.57 , 8.81 ,20.16 ,24.53),
    relative=c( 1.000 ,  1.217 ,  2.304 ,  3.478 , 17.913 , 37.261 , 38.304 , 87.652 ,106.652),
    user.self=c(0.23, 0.28 , 0.53 , 0.61 , 4.13 , 8.55 , 8.80 ,18.06 ,19.08),
    sys.self=c(0.00, 0.00 ,0.00, 0.00 ,0.00, 0.00 ,0.00 ,0.13, 0.51)
)

这次，我使用了三个csv文件作为输入:

This time I used three csv files as an input :

df_3 <- data.frame(
    test=c("s3", "s7" ,"s4", "s1", "s5", "s6","s2", "s9","s8"),
    replications=c(10,10, 10, 10 ,10 ,10 ,10 ,10 ,10),
    elapsed=c( 0.34 , 0.47 , 0.70 , 2.41  ,8.26 , 8.75 , 9.03, 28.78 ,36.56),
    relative=c( 1.000 ,  1.382 ,  2.059  , 7.088 , 24.294 , 25.735 , 26.559  ,84.647 ,107.529),
    user.self=c(0.34 , 0.46  ,0.70 , 1.72 , 8.26 , 8.74  ,9.01, 26.24 ,30.95),
    sys.self=c(0.00 ,0.00 ,0.00, 0.12, 0.00 ,0.00 ,0.00, 0.12 ,0.77)
)

在我想要的绘图中，必须将两个折线图或曲线放在一个网格中.

In my desired plot, two line plot or curve must be placed in one grid.

如何使用上述基准测试结果获得漂亮的折线图或曲线?如何获得所需的图，以显示R中算法的性能?非常感谢

How can I get nice line graph or curve by using above benchmark result ? How can I achieve desired plot that show performance of algorithm in R ? Thanks a lot

推荐答案

您可以尝试一下(假设 s1，s2，s3，... 代表不同的测试，可能使用不同的n ，您要比较的结果与 df_3 的结果 df_2 ):

You can try this (assuming that s1, s2, s3, ... represent different tests, possibly with different n, that you want to compare, with the results df_2 against df_3):

library(reshape2)
df_2 <- melt(df_2, id='test')
df_3 <- melt(df_3, id='test')
df_2$num_input <- 'two_input'
df_3$num_input <- 'three_input'
df <- rbind(df_2, df_3)
library(ggplot2)
ggplot(df, aes(test, value, group=num_input, col=num_input)) + geom_point() + geom_line() + facet_wrap(~variable)

如果要针对 test 绘制已使用的图形，请尝试以下操作:

If you want to plot elapsed against test try this:

ggplot(df[df$variable=='elapsed',], aes(test, value, group=num_input, col=num_input)) + geom_point() + geom_line(lwd=2) + ylab('elapsed') +
  theme(text=element_text(size=15))

如果您想要更具可读性的图像，请尝试以下操作:

If you want more readable images, try this:

ggplot(df, aes(test, value, group=num_input, col=num_input)) + geom_point() + geom_line(lwd=2) + facet_wrap(~variable) +
  theme(text=element_text(size=15))

geom_smooth

ggplot(df[df$variable=='elapsed',], aes(test, value, group=num_input, col=num_input)) + 
  geom_point() + geom_smooth(span=0.7, se=FALSE) + ylab('elapsed') +
  theme(text=element_text(size=15))

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