安装 rJava - 一种或多种 JNI 类型与 Mac Os 10.11 上的相应本机类型不同 [英] install rJava - One or more JNI types differ from the corresponding native type on Mac Os 10.11
问题描述
我正在尝试在我的 mac 上获得一个有效的 R 环境.我刚刚更新到 Mac OS 10.11.1.
I am trying to get a working R environnement on my mac. I just updated to Mac OS 10.11.1.
从 rStudio, install.packages("rJava") 导致此错误:
From rStudio, install.packages("rJava") leads to this error:
checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver : '/usr/bin/jar'
compiler : '/usr/bin/javac'
header prep.: '/usr/bin/javah'
cpp flags : '-I/Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/jre/../include/darwin'
java libs : '-L/Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/jre/lib/server -ljvm'
checking whether Java run-time works... yes
checking whether -Xrs is supported... yes
checking whether JNI programs can be compiled... yes
checking JNI data types...
configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to fix this.
ERROR: configuration failed for package ‘rJava’
* removing ‘/usr/local/lib/R/3.2/site-library/rJava’
R CMD javareconf 的输出为:
The output of R CMD javareconf is:
Java interpreter : /Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/jre/bin/java
Java version : 1.8.0_66
Java home path : /Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home
Java compiler : /Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/bin/javac
Java headers gen.: /Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/bin/javah
Java archive tool: /Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/bin/jar
System Java on OS X
trying to compile and link a JNI program
detected JNI cpp flags : -I/System/Library/Frameworks/JavaVM.framework/Headers
detected JNI linker flags : -framework JavaVM
clang -I/usr/local/Cellar/r/3.2.2_1/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I/usr/local/opt/openssl/include -I/usr/local/include -I/usr/local/include -fPIC -g -O2 -c conftest.c -o conftest.o
conftest.c:4:5: warning: 'JNI_CreateJavaVM' is deprecated [-Wdeprecated-declarations]
JNI_CreateJavaVM(0, 0, 0);
^
/System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1937:1: note: 'JNI_CreateJavaVM' has been explicitly marked deprecated here
JNI_CreateJavaVM(JavaVM **pvm, void **penv, void *args);
^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress - L/usr/local/Cellar/r/3.2.2_1/R.framework/Resources/lib - L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/openssl/lib -L/usr/local/lib -o conftest.so conftest.o -framework JavaVM -F/usr/local/Cellar/r/3.2.2_1/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation
JAVA_HOME : /Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home
Java library path:
JNI cpp flags : -I/System/Library/Frameworks/JavaVM.framework/Headers
JNI linker flags : -framework JavaVM
Updating Java configuration in /usr/local/Cellar/r/3.2.2_1/R.framework/Resources
我不知道.有没有办法解决这个问题?
I have no clue. Any idea to fix this?
谢谢
推荐答案
I had exactly the same problem, and finally resolved, via a solution I found here.
新的 Mac OS X(10.11，El Capitan)在环境变量方面有问题.
The new Mac OS X (10.11, El Capitan) has trouble with env variables.
rJava 的最新开发风格设法正确处理事情.这是我为解决它所做的:
The newest dev flavor of rJava manages to handle things correctly. Here is what I did to resolve it:
- 从 这里
从下载的源安装:
- Download version 0.9-8 (
rJava_0.9-8.tar.gz) from here Install it from the downloaded source:
$ R CMD INSTALL ~/Downloads/rJava_0.9-8.tar.gz
$ R CMD INSTALL ~/Downloads/rJava_0.9-8.tar.gz
(或者你放在哪里)
仅此而已！
这篇关于安装 rJava - 一种或多种 JNI 类型与 Mac Os 10.11 上的相应本机类型不同的文章就介绍到这了，希望我们推荐的答案对大家有所帮助，也希望大家多多支持IT屋！
