R Rcpp在R 3.1.0中安装错误 [英] R Rcpp install error in R 3.1.0

问题描述

我想使用 install.packages（Rcpp）安装Rcpp，但失败了。
错误信息：

pre code安装源代码包'Rcpp'...
**软件包'Rcpp'成功解压并检查MD5总和
** libs
g ++ -I / usr / local / lib64 / R / include -DNDEBUG -I ../ inst / include / -I / usr / local / include -fpic -g -O2 -c Date.cpp -o Date.o
g ++ -I / usr / local / lib64 / R / include -DNDEBUG -I ../ inst / include / -I / usr / local / include -fpic -g -O2 -c Module.cpp -o Module.o
g ++ -I / usr / local / lib64 / R / include -DNDEBUG -I ../ inst / include / - I / usr / local / include -fpic -g -O2 -c Rcpp_init.cpp -o Rcpp_init.o
g ++ -I / usr / local / lib64 / R / include -DNDEBUG -I ../ inst / include / -I / usr / local / include -fpic -g -O2 -c api.cpp -o api.o
g ++ -I / usr / local / lib64 / R / include -DNDEBUG -I ../ inst / include / -I / usr / local / include -fpic -g -O2 -c attributes.cpp -o attributes.o
g ++ -I / usr / local / lib64 / R / include -DNDEBUG -I .. / inst / include / -I / usr / local / include -fpic -g -O2 -c barrier.cpp -o barrier.o
g ++ -shared -L / usr / local / lib64 -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o
安装到/home/sethbrin/R/x86_64-redhat-linux-gnu-library/3.1/ Rcpp / libs
** R
** inst
**为延迟加载准备包
**帮助
***安装帮助索引
* *构建软件包索引
**安装静态文件
**测试是否可以加载已安装的软件包
dyn.load中的错误（文件，DLLpath = DLLpath，...）：
无法加载共享对象'/home/sethbrin/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/libs/Rcpp.so'：
/ home / sethbrin / R / x86_64-redhat-linux -gnu-library / 3.1 / Rcpp / libs / Rcpp.so：undefined symbol：_ZNSt15basic_streambufIcSt11char_traitsIcEE7seekoffExSt12_Ios_SeekdirSt13_Ios_Openmode
错误：加载失败
执行暂停
错误：加载失败
*去掉'/ home /sethbrin/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp'

下载的源文件包位于
'/ tmp / Rtmp6PKB8N / downloaded_pa​​ckages'
警告我ssage：
在install.packages（Rcpp）中：
安装包'Rcpp'具有非零退出状态

然后我使用

$ c $ fit $ _c $ c b std :: basic_streambuf< char，std :: char_traits< char> > :: seekoff（long long，std :: _ Ios_Seekdir，std :: _ Ios_Openmode）

我有寻找一些解决方案。这似乎是因为gcc版本。但我不知道如何改变R用于编译Rcpp包的gcc版本。 CRAN 测试 Rcpp ，就像其他6700+包一样。

您可以看到汇总测试报告，测试设置包括两台基于Fedora的机器：

• 一个fedora设置使用clang 和


• 一个使用g ++的fedora设置。

因为您的问题可能是本地的，或者仅仅是由于使用较旧的设置。在这种情况下，存档部分可让您访问旧版本。

I want to install Rcpp using install.packages("Rcpp"), but it failed. The error message:

* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/local/lib64/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include    -fpic  -g -O2  -c Date.cpp -o Date.o
g++ -I/usr/local/lib64/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include    -fpic  -g -O2  -c Module.cpp -o Module.o
g++ -I/usr/local/lib64/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include    -fpic  -g -O2  -c Rcpp_init.cpp -o Rcpp_init.o
g++ -I/usr/local/lib64/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include    -fpic  -g -O2  -c api.cpp -o api.o
g++ -I/usr/local/lib64/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include    -fpic  -g -O2  -c attributes.cpp -o attributes.o
g++ -I/usr/local/lib64/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include    -fpic  -g -O2  -c barrier.cpp -o barrier.o
g++ -shared -L/usr/local/lib64 -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o
installing to /home/sethbrin/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
unable to load shared object '/home/sethbrin/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/libs/Rcpp.so':
 /home/sethbrin/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/libs/Rcpp.so: undefined symbol: _ZNSt15basic_streambufIcSt11char_traitsIcEE7seekoffExSt12_Ios_SeekdirSt13_Ios_Openmode
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/sethbrin/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp’

The downloaded source packages are in
‘/tmp/Rtmp6PKB8N/downloaded_packages’
Warning message:
In install.packages("Rcpp") :
installation of package ‘Rcpp’ had non-zero exit status

Then I use

c++fit _ZNSt15basic_streambufIcSt11char_traitsIcEE7seekoffExSt12_Ios_SeekdirSt13_Ios_Openmode

std::basic_streambuf<char, std::char_traits<char> >::seekoff(long long, std::_Ios_Seekdir, std::_Ios_Openmode)

I have searched for some solutions for that. It seems that it is because of the gcc version. But I don't know how to change the gcc version that R uses to compile Rcpp package.

解决方案

CRAN tests Rcpp just like any other of the (by now) 6700+ package.

You can see the aggregate test report and the test setups includes two Fedora-based machines:

• one fedora setup using clang and
• one fedora setup using g++.

As such your problems are possibly local, or simply due to using an older setup. In which case the Archive section gives you access to an older version.

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