rpy2:检查软件包是否已安装 [英] rpy2: check if package is installed

问题描述

使用rpy2，我要检查是否安装了给定的软件包.如果是这样，我将其导入.如果没有，我先安装它.

Using rpy2, I want to check if a given package is installed. If it is, I import it. If not, I install it first.

如何检查它是否已安装?

How do I check if it's installed?

from rpy2 import *
if not *my package is installed*:
   rpy2.interactive as r
   r.importr("utils")
   package_name = "my_package"
   r.packages.utils.install_packages(package_name)
myPackage = importr("my_package")

推荐答案

此处是在Python端执行此操作的函数 (请注意contriburl，应将其设置为CRAN镜像，并且不会处理库安装失败的情况.)

Here is a function that'd do it on the Python side (note the contriburl, that should be set to a CRAN mirror, and that the case where installing the library is failing is not handled).

from rpy2.rinterface import RRuntimeError
from rpy2.robjects.packages import importr
utils = importr('utils')

def importr_tryhard(packname, contriburl):
    try:
        rpack = importr(packname)
    except RRuntimeError:
        utils.install_packages(packname, contriburl = contriburl)
        rpack = importr(packname)
    return rpack

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