在Windows/Linux中为Mac创建软件包 [英] Creating package for Mac in Windows / Linux

问题描述

我一直在努力制作自己的r包装.我按照如何为外行开发程序包上的stackoverflow中上一个问题中的说明进行操作.这是我根据上一个问题处理的步骤.

I have trying hard to make a r package myself. I followed the instruction in previous question in stackoverflow on how to develop package for layman. Here are the steps I tool following the previous question.

1. 在全新的R会话中运行R代码

1. Run R code in fresh R session

# random DNA function
randDNA = function(n){
paste(sample(c("A", "C", "T", "G"), n, replace = TRUE), collapse = "")
}
# DNA to RNA function
dna2rna <- function(inputStr) {
  if (!is.character(inputStr))
    stop("need character input")
  is = toupper(inputStr)
  chartr("T", "U", is)
}

# complementary sequence function
compSeq <-  function(inputStr){
 chartr("ACTG", "TGAC", inputStr)
 }

# example data
dnaseq1 <- c("ATTGTATCTGGGTATTTCCCTTAATTGGGGCCTTT")
dnaseq2 <- c("TGGGGTAAACCCGGTTTAAAATATATATATTTTT")
myseqdata <- data.frame(dnaseq1, dnaseq2)
save(myseqdata, file = "myseqdata.RData")

安装 Rtools 安装R包

Install Rtools Install R package utils

从R中的以下任务中删除

Pefrom the following task in R

require(utils)
package.skeleton(list = c("randDNA","dna2rna", "compSeq", "myseqdata"), 
name = "dnatool",environment = .GlobalEnv, path = "c:", force = FALSE)

在Windows 7中编辑要遵循的系统环境变量路径

Edit system environment variable path to following in windows 7

C:\Rtools\bin;C:\Rtools\perl\bin;C:\Rtools\MinGW\bin; 
C:\Program Files\R\R-2.14.2\bin\x64; 

(在命令行中键入>path来检查路径是否正确设置.

(type >path in command line to check if the path is properly set.

在步骤(3)中复制文件夹dnatool并放入名为rpackage的新文件夹，现在将目录更改为该文件夹(在DOS中)

Copy the folder dnatool in step (3) and put in new folder named rpackage, Now change directory to this folder (in DOS)

c: \ repackage>  R CMD build dnatool 
c: \ repackage>  Rcmd build dnatool 

我有时会得到dnatool.zip，而其他时候会得到dnatool.tar.gx

在命令行(DOS)中检查软件包

Checking package in command line (DOS)

c: \ repackage> R CMD check dnatool

我能够在Windows中将其打包为"dnatool.zip".

I was able to pack it as "dnatool.zip" in windows.

如何为MAC或Unix源进行编译?有哪些不同的步骤?

How can compile for MAC or unix source ? What steps are different ?

Unix source:     dnatool.tar.gz
Mac OS X binary: dnatool.tgz

我需要Mac电脑吗?我有linux virtualbox并在其中安装了ubuntu吗?

Do I need Mac computer to do. I do have linux virtualbox and installed ubuntu in it ?

应该使用以下commad以获得sourcode二进制来自步骤(3)夹dnatool?

Should I use the following commad to get sourcode binary from step (3) folder dnatool ?

$ tar -zcvf dnatool.tar.gz/home/dnatool

推荐答案

使用R CMD build创建的程序包可以安装在其他OS类型上.即使您的软件包包含R(c或c ++)以外的源代码，也是如此.仅当您创建二进制发行版时(我认为通过在r cmd构建调用中添加--binary)，程序包才成为特定于平台的.生成软件包所需的工具通常已经安装在linux或mac下.因此，如果您创建源代码发行版，则它应该在所有主要发行版下都可以正常工作.要创建Mac二进制文件，您需要Mac或创建交叉编译器环境.第二种选择可能是一个很大的挑战，我说你可以给谷歌.请注意，如果您将软件包上传到CRAN，则所有软件包的构建都已为您完成.

The package that was created using R CMD build can be installed on other OS types. Even if your package contains source code other than R (c or c++) this is the case. Only when you create a binary distribution (I think by adding --binary to the r cmd build call) the package becomes platform specific. The tools needed to build packages are often already installed under linux or mac. So if you create a source distribution, it should work under all the major distributions. To create a mac binary, you need either a mac, or create a cross-compiler environment. The second option could be quite a challenge, I say you could give to a google. Do note that if you upload your package to CRAN, all building of packages is done for you.

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