错误:安装R相关软件包时未找到gdal-config，但已安装gdal [英] Error: gdal-config not found while installing R dependent packages whereas gdal is installed

问题描述

请指出我想念的要点:

openSUSE 11.3

xx@linux-y3pi:~/Desktop/R> sudo R CMD INSTALL rgdal_0.7-12.tar.gz 
root's password:
* installing to library ‘/usr/lib64/R/library’
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: gdal-config: gdal-config
checking gdal-config usability... ./configure: line 1353: gdal-config: command not found
no
Error: gdal-config not found
The gdal-config script distributed with GDAL could not be found.
If you have not installed the GDAL libraries, you can
download the source from  http://www.gdal.org/
If you have installed the GDAL libraries, then make sure that
gdal-config is in your path. Try typing gdal-config at a
shell prompt and see if it runs. If not, use:
 --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
with appropriate values for your installation.

ERROR: configuration failed for package ‘rgdal’
* removing ‘/usr/lib64/R/library/rgdal’

---

xx@linux-y3pi:~/Desktop/R> whereis gdal-config
gdal-config: /usr/local/bin/gdal-config

xx@linux-y3pi:~/Desktop/R> gdal-config 
Usage: gdal-config [OPTIONS]
Options:
 [--prefix[=DIR]]
 [--libs]
 [--dep-libs]
 [--cflags]
 [--datadir]
 [--version]
 [--ogr-enabled]
 [--formats]
 xx@linux-y3pi:~/Desktop/R>

---

> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     
> 

---

xx@linux-y3pi:~/Desktop/R> gdal-config --version
1.9.0

xx@linux-y3pi:~/Desktop/R> proj
Rel. 4.8.0, 6 March 2012
usage: proj [ -beEfiIlormsStTvVwW [args] ] [ +opts[=arg] ] [ files ]

---

linux-y3pi:~ # $PATH
bash: /home/xx/qtsdk-2010.05/qt/bin/:/home/xx/qtsdk-2010.05/bin:/home/xx/qtsdk-2010.05/qt/bin:/home/xx/qtsdk-2010.05/qt/bin/:/home/xx/qtsdk-2010.05/bin:/usr/lib64/mpi/gcc/openmpi/bin:/home/xx/bin:/usr/local/bin:/usr/bin:/sbin:/usr/sbin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games: No such file or directory

推荐答案

除了用于部署的常规软件包之外，您还需要用于开发的带有标头和共享库链接的-dev软件包强>.就发行版而言，有两种不同的用例.

You need the -dev package with headers and shared library links for development besides the normal package for deployment. Two different use cases as far as the distro is concerned.

在我的分布中:

edd@max:/tmp$ dpkg -l | grep gdal | cut -c-72
ii  libgdal1-1.7.0                                1.7.3-6ubuntu3        
ii  libgdal1-dev                                  1.7.3-6ubuntu3        
edd@max:/tmp$ 

鉴于CRAN的所有构建时检查，

和R CMD INSTALL rgdal_0.7-8.tar.gz的工作效果与您期望的CRAN包一样好.

and R CMD INSTALL rgdal_0.7-8.tar.gz works just fine as you would expect from a CRAN package given all the build-time checks at CRAN.

2016年末更新:正如@ JoshO'Brien在评论中指出的那样

Update late 2016: As @JoshO'Brien points out in the comment

次要更新:在2016年运行Ubuntu 14.04.2的情况下，libgdal1h似乎可以 已替换libgdal1(尽管仍需要libgdal1-dev).至少 尝试apt-get install libgdal1

Minor update: Here in 2016, running Ubuntu 14.04.2, libgdal1h seems to have replaced libgdal1(though libgdal1-dev is still needed). At least I get an error to that effect when I attempted to apt-get install libgdal1

对于Ubuntu 16.04，对应的行是
sudo apt-get install libgdal1i

For Ubuntu 16.04 the corresponding line would be
sudo apt-get install libgdal1i

这种对上游库的重命名很常见； apt-cache search libgdal之类的东西可以帮助找到当前的软件包名称. 重要关键在于，构建"abstract"开发包libgdal-dev所需要的全部，因为它通过via提取了具体的"当前运行时包(此处为libgdal1i).依赖项.

Such renaming of upstream libraries is common; something such as apt-cache search libgdal can help locate the current package names. The important key though is that the "abstract" development package libgdal-dev is all that is needed to build as it pulls the "concrete" current run-time package (here: libgdal1i) in via a dependency.

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