在 RMarkdown html 文档中显示 python 绘图图 [英] Display python plotly graph in RMarkdown html document

问题描述

为什么python的plotly包不能在RMarkdown中显示图形而matplotlib可以?例如:

Why plotly package of python can not display figure in RMarkdown but matplotlib can? For example:

 ```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE, message = FALSE, warning = FALSE)
```

```{r}
library(plotly)
subplot(
     plot_ly(mpg, x = ~cty, y = ~hwy, name = 'default'),
     plot_ly(mpg, x = ~cty, y = ~hwy) %>%
         add_markers(alpha = 0.2, name = 'alpha'),
     plot_ly(mpg, x = ~cty, y = ~hwy) %>%
         add_markers(symbols = I(1), name = 'hollow')
 )
```

```{python}
import plotly
import plotly.plotly as py
import plotly.graph_objs as go
import numpy as np

plotly.tools.set_credentials_file(username='xxx', api_key='xxx')

N = 500
trace0 = go.Scatter(x = np.random.randn(N), y = np.random.randn(N) + 2, name = "Above", mode = "markers",
marker = dict(size = 10, color = "rgba(152, 0, 0, .8)", line = dict(width = 2, color = "rgb(0,0,0)")))

trace1 = go.Scatter(x = np.random.randn(N), y = np.random.randn(N) - 2, name = "below", mode = "markers",
marker = dict(size = 10, color = "rgba(255, 182, 193, .9)", line = dict(width = 2, color = "rgb(0,0,0)")))

data = [trace0, trace1]
layout = dict(title = "Styled Scatter", yaxis = dict(zeroline = False), xaxis = dict(zeroline=False))
fig = dict(data = data, layout = layout)
py.iplot(fig, filename = "styled-scatter")
```

R代码可以正常工作，但是python代码显示不出来，代码有什么问题?

The R code can work well, but the python code can not dispay the figure, what is wrong with the code?

推荐答案

这是我所做的:

1. 离线使用:
   • 将 import plotly.plotly as py 替换为 import plotly.offline as py
   • 离线模式下无需设置用户名和api key.

• py.iplot() 用于 Jupyter 笔记本(它将绘图直接嵌入到笔记本中)
• auto_open = False 参数是为了避免情节弹出.

• py.iplot() is for Jupyter notebooks (it embeds the plot directly into the Notebook)
• auto_open = False argument is to avoid that the plot pops up.

使用以下代码将 html 图嵌入到 Rmarkdown 中:

embedded the html plot into the Rmarkdown by using the following:

```{r, echo=FALSE}
htmltools::includeHTML("styled-scatter.html")
```

结果如下:

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