安装包时非零退出，只有 tidyverse [英] non zero exit when installing package, only tidyverse
问题描述
我已经在 Ubunto 上设置了托管 RStudio，并且已经加载了几个没有问题的包，包括插入符号和 lubridate.
I've set up hosted RStudio on Ubunto and have loaded several packages already with no issues, including caret and lubridate.
但是，当我尝试安装 tidyverse 时，我得到:
However, when I tried to install tidyverse I get:
> install.packages("tidyverse", dependencies = T)
Installing package into ‘/home/rstudio/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/tidyverse_1.2.1.tar.gz'
Content type 'application/x-gzip' length 61647 bytes (60 KB)
==================================================
downloaded 60 KB
* installing *source* package ‘tidyverse’ ...
** package ‘tidyverse’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Warning: S3 methods ‘as.col_spec.NULL’, ‘as.col_spec.character’, ‘as.col_spec.col_spec’, ‘as.col_spec.default’, ‘as.col_spec.list’, ‘format.col_spec’, ‘output_column.POSIXt’, ‘output_column.default’, ‘output_column.double’, ‘print.col_spec’, ‘print.collector’, ‘print.date_names’, ‘print.locale’ were declared in NAMESPACE but not found
Error in library.dynam(lib, package, package.lib) :
shared object ‘readr.so’ not found
ERROR: lazy loading failed for package ‘tidyverse’
* removing ‘/home/rstudio/R/x86_64-pc-linux-gnu-library/3.4/tidyverse’
Warning in install.packages :
installation of package ‘tidyverse’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmpv6cOap/downloaded_packages’
在 Ubuntu 上安装 r 和 rstudio 后，我还安装了 r-base-dev、libcurl4-openssl-dev、libssl-dev 和 libxml2-dev.在最初尝试安装 tidyverse 后，我按照控制台消息执行了此操作.
After installing r and rstudio on Ubuntu I also installed r-base-dev, libcurl4-openssl-dev, libssl-dev and libxml2-dev. I did this following console messages after initially trying to install tidyverse.
我该如何克服这个错误并安装 tidyverse?
How can I overcome this error and install tidyverse?
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8
[5] LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 LC_PAPER=C.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] caret_6.0-80 ggplot2_3.0.0 lattice_0.20-35 lubridate_1.7.4 dplyr_0.7.6
loaded via a namespace (and not attached):
[1] Rcpp_0.12.18 tidyr_0.8.1 class_7.3-14 assertthat_0.2.0 ipred_0.9-7
[6] foreach_1.4.4 R6_2.2.2 plyr_1.8.4 backports_1.1.2 magic_1.5-9
[11] stats4_3.4.4 pillar_1.3.0 rlang_0.2.2 lazyeval_0.2.1 rstudioapi_0.7
[16] data.table_1.11.6 kernlab_0.9-27 rpart_4.1-13 Matrix_1.2-12 splines_3.4.4
[21] CVST_0.2-2 ddalpha_1.3.4 gower_0.1.2 stringr_1.3.1 munsell_0.5.0
[26] broom_0.5.0 compiler_3.4.4 pkgconfig_2.0.2 dimRed_0.1.0 nnet_7.3-12
[31] tidyselect_0.2.4 tibble_1.4.2 prodlim_2018.04.18 DRR_0.0.3 codetools_0.2-15
[36] RcppRoll_0.3.0 crayon_1.3.4 withr_2.1.2 MASS_7.3-49 recipes_0.1.3
[41] ModelMetrics_1.2.0 grid_3.4.4 nlme_3.1-131 gtable_0.2.0 magrittr_1.5
[46] scales_1.0.0 stringi_1.2.4 reshape2_1.4.3 bindrcpp_0.2.2 timeDate_3043.102
[51] robustbase_0.93-3 geometry_0.3-6 pls_2.7-0 lava_1.6.3 iterators_1.0.10
[56] tools_3.4.4 glue_1.3.0 DEoptimR_1.0-8 purrr_0.2.5 sfsmisc_1.1-2
[61] abind_1.4-5 survival_2.41-3 yaml_2.2.0 colorspace_1.3-2 bindr_0.1.1
推荐答案
看起来像 readr 的问题...
Looks like an issue with readr...
Error in library.dynam(lib, package, package.lib) :
shared object ‘readr.so’ not found
使用下面的代码检查软件包是否已安装.如果没有，它会被安装
Use the code below to check if the package is installed. If not, it will be installed
#Specify packages
packages = c("readr")
package.check <- lapply(packages, FUN = function(x) {
if (!require(x, character.only = TRUE)) {
install.packages(x, dependencies = TRUE)
library(x, character.only = TRUE)
}
})
#Verify they are loaded
search()
如果已安装，文件可能被锁定...
If it is installed, the file may be locked...
#If "failed to create lock" is the returned error, install with the below code;
install.packages("readr", dependencies=TRUE, INSTALL_opts = c('--no-lock'))
(https://github.com/tidyverse/tidyverse/issues/99)
这篇关于安装包时非零退出，只有 tidyverse的文章就介绍到这了，希望我们推荐的答案对大家有所帮助，也希望大家多多支持IT屋！
